Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 20708 | 62347;62348;62349 | chr2:178589603;178589602;178589601 | chr2:179454330;179454329;179454328 |
N2AB | 19067 | 57424;57425;57426 | chr2:178589603;178589602;178589601 | chr2:179454330;179454329;179454328 |
N2A | 18140 | 54643;54644;54645 | chr2:178589603;178589602;178589601 | chr2:179454330;179454329;179454328 |
N2B | 11643 | 35152;35153;35154 | chr2:178589603;178589602;178589601 | chr2:179454330;179454329;179454328 |
Novex-1 | 11768 | 35527;35528;35529 | chr2:178589603;178589602;178589601 | chr2:179454330;179454329;179454328 |
Novex-2 | 11835 | 35728;35729;35730 | chr2:178589603;178589602;178589601 | chr2:179454330;179454329;179454328 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/S | rs377175428 | -2.108 | 0.201 | N | 0.446 | 0.192 | 0.200317383148 | gnomAD-2.1.1 | 8.08E-06 | None | None | None | None | N | None | 0 | 2.9E-05 | None | 0 | 0 | None | 0 | None | 0 | 8.95E-06 | 0 |
R/S | rs377175428 | -2.108 | 0.201 | N | 0.446 | 0.192 | 0.200317383148 | gnomAD-4.0.0 | 4.10639E-06 | None | None | None | None | N | None | 0 | 2.23714E-05 | None | 0 | 0 | None | 0 | 0 | 3.59857E-06 | 0 | 1.65684E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.8807 | likely_pathogenic | 0.9265 | pathogenic | -2.033 | Highly Destabilizing | 0.25 | N | 0.427 | neutral | None | None | None | None | N |
R/C | 0.3003 | likely_benign | 0.4406 | ambiguous | -1.952 | Destabilizing | 0.992 | D | 0.547 | neutral | None | None | None | None | N |
R/D | 0.9857 | likely_pathogenic | 0.9917 | pathogenic | -0.737 | Destabilizing | 0.617 | D | 0.509 | neutral | None | None | None | None | N |
R/E | 0.8776 | likely_pathogenic | 0.918 | pathogenic | -0.538 | Destabilizing | 0.25 | N | 0.391 | neutral | None | None | None | None | N |
R/F | 0.8818 | likely_pathogenic | 0.9175 | pathogenic | -1.422 | Destabilizing | 0.972 | D | 0.565 | neutral | None | None | None | None | N |
R/G | 0.8028 | likely_pathogenic | 0.8746 | pathogenic | -2.382 | Highly Destabilizing | 0.549 | D | 0.506 | neutral | N | 0.482475282 | None | None | N |
R/H | 0.2507 | likely_benign | 0.3174 | benign | -2.203 | Highly Destabilizing | 0.92 | D | 0.518 | neutral | None | None | None | None | N |
R/I | 0.8202 | likely_pathogenic | 0.8541 | pathogenic | -1.032 | Destabilizing | 0.92 | D | 0.576 | neutral | None | None | None | None | N |
R/K | 0.122 | likely_benign | 0.1679 | benign | -1.454 | Destabilizing | 0.001 | N | 0.118 | neutral | N | 0.384204808 | None | None | N |
R/L | 0.6679 | likely_pathogenic | 0.7279 | pathogenic | -1.032 | Destabilizing | 0.617 | D | 0.506 | neutral | None | None | None | None | N |
R/M | 0.6885 | likely_pathogenic | 0.7596 | pathogenic | -1.42 | Destabilizing | 0.963 | D | 0.551 | neutral | N | 0.520215172 | None | None | N |
R/N | 0.9421 | likely_pathogenic | 0.9638 | pathogenic | -1.221 | Destabilizing | 0.617 | D | 0.427 | neutral | None | None | None | None | N |
R/P | 0.9946 | likely_pathogenic | 0.9971 | pathogenic | -1.353 | Destabilizing | 0.766 | D | 0.57 | neutral | None | None | None | None | N |
R/Q | 0.2442 | likely_benign | 0.3043 | benign | -1.245 | Destabilizing | 0.447 | N | 0.429 | neutral | None | None | None | None | N |
R/S | 0.9291 | likely_pathogenic | 0.9623 | pathogenic | -2.258 | Highly Destabilizing | 0.201 | N | 0.446 | neutral | N | 0.494719295 | None | None | N |
R/T | 0.9024 | likely_pathogenic | 0.9341 | pathogenic | -1.843 | Destabilizing | 0.549 | D | 0.487 | neutral | N | 0.505611079 | None | None | N |
R/V | 0.8485 | likely_pathogenic | 0.8884 | pathogenic | -1.353 | Destabilizing | 0.617 | D | 0.545 | neutral | None | None | None | None | N |
R/W | 0.6637 | likely_pathogenic | 0.7417 | pathogenic | -0.841 | Destabilizing | 0.99 | D | 0.582 | neutral | N | 0.519001664 | None | None | N |
R/Y | 0.7827 | likely_pathogenic | 0.8432 | pathogenic | -0.697 | Destabilizing | 0.972 | D | 0.57 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.