Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 20709 | 62350;62351;62352 | chr2:178589600;178589599;178589598 | chr2:179454327;179454326;179454325 |
N2AB | 19068 | 57427;57428;57429 | chr2:178589600;178589599;178589598 | chr2:179454327;179454326;179454325 |
N2A | 18141 | 54646;54647;54648 | chr2:178589600;178589599;178589598 | chr2:179454327;179454326;179454325 |
N2B | 11644 | 35155;35156;35157 | chr2:178589600;178589599;178589598 | chr2:179454327;179454326;179454325 |
Novex-1 | 11769 | 35530;35531;35532 | chr2:178589600;178589599;178589598 | chr2:179454327;179454326;179454325 |
Novex-2 | 11836 | 35731;35732;35733 | chr2:178589600;178589599;178589598 | chr2:179454327;179454326;179454325 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs371705537 | -1.113 | 0.996 | N | 0.391 | 0.161 | None | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | N | None | 6.46E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
L/F | rs371705537 | -1.113 | 0.996 | N | 0.391 | 0.161 | None | gnomAD-3.1.2 | 3.95E-05 | None | None | None | None | N | None | 1.4483E-04 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
L/F | rs371705537 | -1.113 | 0.996 | N | 0.391 | 0.161 | None | gnomAD-4.0.0 | 5.57906E-06 | None | None | None | None | N | None | 1.06869E-04 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 1.60138E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.2131 | likely_benign | 0.2548 | benign | -1.635 | Destabilizing | 0.079 | N | 0.123 | neutral | None | None | None | None | N |
L/C | 0.5415 | ambiguous | 0.6347 | pathogenic | -0.923 | Destabilizing | 0.999 | D | 0.391 | neutral | None | None | None | None | N |
L/D | 0.72 | likely_pathogenic | 0.8091 | pathogenic | -0.805 | Destabilizing | 0.046 | N | 0.309 | neutral | None | None | None | None | N |
L/E | 0.3283 | likely_benign | 0.3851 | ambiguous | -0.768 | Destabilizing | 0.884 | D | 0.409 | neutral | None | None | None | None | N |
L/F | 0.2063 | likely_benign | 0.2801 | benign | -1.031 | Destabilizing | 0.996 | D | 0.391 | neutral | N | 0.488350683 | None | None | N |
L/G | 0.4781 | ambiguous | 0.5729 | pathogenic | -1.989 | Destabilizing | 0.884 | D | 0.429 | neutral | None | None | None | None | N |
L/H | 0.2849 | likely_benign | 0.3738 | ambiguous | -1.107 | Destabilizing | 0.999 | D | 0.457 | neutral | N | 0.458470493 | None | None | N |
L/I | 0.1102 | likely_benign | 0.1303 | benign | -0.725 | Destabilizing | 0.92 | D | 0.309 | neutral | N | 0.435921707 | None | None | N |
L/K | 0.1717 | likely_benign | 0.1973 | benign | -1.016 | Destabilizing | 0.939 | D | 0.413 | neutral | None | None | None | None | N |
L/M | 0.1135 | likely_benign | 0.1503 | benign | -0.598 | Destabilizing | 0.997 | D | 0.42 | neutral | None | None | None | None | N |
L/N | 0.3785 | ambiguous | 0.4589 | ambiguous | -0.868 | Destabilizing | 0.982 | D | 0.461 | neutral | None | None | None | None | N |
L/P | 0.153 | likely_benign | 0.2053 | benign | -0.998 | Destabilizing | 0.988 | D | 0.465 | neutral | N | 0.395707094 | None | None | N |
L/Q | 0.1208 | likely_benign | 0.1444 | benign | -0.984 | Destabilizing | 0.991 | D | 0.476 | neutral | None | None | None | None | N |
L/R | 0.1836 | likely_benign | 0.232 | benign | -0.482 | Destabilizing | 0.988 | D | 0.454 | neutral | N | 0.408292389 | None | None | N |
L/S | 0.2901 | likely_benign | 0.3818 | ambiguous | -1.548 | Destabilizing | 0.884 | D | 0.394 | neutral | None | None | None | None | N |
L/T | 0.2331 | likely_benign | 0.2851 | benign | -1.385 | Destabilizing | 0.17 | N | 0.157 | neutral | None | None | None | None | N |
L/V | 0.105 | likely_benign | 0.1323 | benign | -0.998 | Destabilizing | 0.826 | D | 0.361 | neutral | N | 0.458297135 | None | None | N |
L/W | 0.3738 | ambiguous | 0.51 | ambiguous | -1.107 | Destabilizing | 0.999 | D | 0.497 | neutral | None | None | None | None | N |
L/Y | 0.4172 | ambiguous | 0.5369 | ambiguous | -0.879 | Destabilizing | 0.997 | D | 0.413 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.