Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 21096 | 63511;63512;63513 | chr2:178588121;178588120;178588119 | chr2:179452848;179452847;179452846 |
N2AB | 19455 | 58588;58589;58590 | chr2:178588121;178588120;178588119 | chr2:179452848;179452847;179452846 |
N2A | 18528 | 55807;55808;55809 | chr2:178588121;178588120;178588119 | chr2:179452848;179452847;179452846 |
N2B | 12031 | 36316;36317;36318 | chr2:178588121;178588120;178588119 | chr2:179452848;179452847;179452846 |
Novex-1 | 12156 | 36691;36692;36693 | chr2:178588121;178588120;178588119 | chr2:179452848;179452847;179452846 |
Novex-2 | 12223 | 36892;36893;36894 | chr2:178588121;178588120;178588119 | chr2:179452848;179452847;179452846 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/N | rs558727238 | -1.985 | 0.999 | D | 0.823 | 0.55 | 0.864698151722 | gnomAD-2.1.1 | 1.65271E-04 | None | None | None | None | I | None | 0 | 2.9E-05 | None | 0 | 0 | None | 1.30787E-03 | None | 0 | 0 | 0 |
I/N | rs558727238 | -1.985 | 0.999 | D | 0.823 | 0.55 | 0.864698151722 | gnomAD-3.1.2 | 4.6E-05 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 1.45108E-03 | 0 |
I/N | rs558727238 | -1.985 | 0.999 | D | 0.823 | 0.55 | 0.864698151722 | 1000 genomes | 3.99361E-04 | None | None | None | None | I | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 2E-03 | None |
I/N | rs558727238 | -1.985 | 0.999 | D | 0.823 | 0.55 | 0.864698151722 | gnomAD-4.0.0 | 7.37809E-05 | None | None | None | None | I | None | 0 | 3.33611E-05 | None | 0 | 0 | None | 0 | 0 | 8.47968E-07 | 1.24154E-03 | 4.80492E-05 |
I/V | rs568922646 | -1.483 | 0.198 | N | 0.249 | 0.122 | 0.474564258015 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | I | None | 0 | 2.9E-05 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
I/V | rs568922646 | -1.483 | 0.198 | N | 0.249 | 0.122 | 0.474564258015 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | I | None | 2.41E-05 | 6.56E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
I/V | rs568922646 | -1.483 | 0.198 | N | 0.249 | 0.122 | 0.474564258015 | 1000 genomes | 1.99681E-04 | None | None | None | None | I | None | 0 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
I/V | rs568922646 | -1.483 | 0.198 | N | 0.249 | 0.122 | 0.474564258015 | gnomAD-4.0.0 | 1.31422E-05 | None | None | None | None | I | None | 2.40535E-05 | 6.54707E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.9669 | likely_pathogenic | 0.9496 | pathogenic | -2.181 | Highly Destabilizing | 0.983 | D | 0.652 | neutral | None | None | None | None | I |
I/C | 0.9778 | likely_pathogenic | 0.9672 | pathogenic | -1.169 | Destabilizing | 1.0 | D | 0.733 | prob.delet. | None | None | None | None | I |
I/D | 0.9983 | likely_pathogenic | 0.9973 | pathogenic | -2.046 | Highly Destabilizing | 0.999 | D | 0.825 | deleterious | None | None | None | None | I |
I/E | 0.9943 | likely_pathogenic | 0.9914 | pathogenic | -1.968 | Destabilizing | 0.999 | D | 0.815 | deleterious | None | None | None | None | I |
I/F | 0.912 | likely_pathogenic | 0.9039 | pathogenic | -1.447 | Destabilizing | 0.997 | D | 0.774 | deleterious | D | 0.53079102 | None | None | I |
I/G | 0.996 | likely_pathogenic | 0.9934 | pathogenic | -2.586 | Highly Destabilizing | 0.999 | D | 0.819 | deleterious | None | None | None | None | I |
I/H | 0.9961 | likely_pathogenic | 0.9938 | pathogenic | -1.849 | Destabilizing | 1.0 | D | 0.795 | deleterious | None | None | None | None | I |
I/K | 0.992 | likely_pathogenic | 0.9871 | pathogenic | -1.661 | Destabilizing | 0.999 | D | 0.813 | deleterious | None | None | None | None | I |
I/L | 0.3436 | ambiguous | 0.314 | benign | -1.084 | Destabilizing | 0.798 | D | 0.479 | neutral | D | 0.522583474 | None | None | I |
I/M | 0.5493 | ambiguous | 0.521 | ambiguous | -0.716 | Destabilizing | 0.997 | D | 0.735 | prob.delet. | N | 0.521805026 | None | None | I |
I/N | 0.9724 | likely_pathogenic | 0.9539 | pathogenic | -1.587 | Destabilizing | 0.999 | D | 0.823 | deleterious | D | 0.534339873 | None | None | I |
I/P | 0.9792 | likely_pathogenic | 0.9641 | pathogenic | -1.424 | Destabilizing | 0.999 | D | 0.823 | deleterious | None | None | None | None | I |
I/Q | 0.9931 | likely_pathogenic | 0.9889 | pathogenic | -1.693 | Destabilizing | 0.999 | D | 0.822 | deleterious | None | None | None | None | I |
I/R | 0.9893 | likely_pathogenic | 0.9826 | pathogenic | -1.054 | Destabilizing | 0.999 | D | 0.827 | deleterious | None | None | None | None | I |
I/S | 0.9801 | likely_pathogenic | 0.9662 | pathogenic | -2.198 | Highly Destabilizing | 0.997 | D | 0.777 | deleterious | D | 0.54493571 | None | None | I |
I/T | 0.9493 | likely_pathogenic | 0.9295 | pathogenic | -2.005 | Highly Destabilizing | 0.978 | D | 0.77 | deleterious | D | 0.522058515 | None | None | I |
I/V | 0.0893 | likely_benign | 0.0888 | benign | -1.424 | Destabilizing | 0.198 | N | 0.249 | neutral | N | 0.474578883 | None | None | I |
I/W | 0.9977 | likely_pathogenic | 0.9974 | pathogenic | -1.669 | Destabilizing | 1.0 | D | 0.775 | deleterious | None | None | None | None | I |
I/Y | 0.9892 | likely_pathogenic | 0.9844 | pathogenic | -1.44 | Destabilizing | 0.999 | D | 0.78 | deleterious | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.