Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 2123 | 6592;6593;6594 | chr2:178775497;178775496;178775495 | chr2:179640224;179640223;179640222 |
N2AB | 2123 | 6592;6593;6594 | chr2:178775497;178775496;178775495 | chr2:179640224;179640223;179640222 |
N2A | 2123 | 6592;6593;6594 | chr2:178775497;178775496;178775495 | chr2:179640224;179640223;179640222 |
N2B | 2077 | 6454;6455;6456 | chr2:178775497;178775496;178775495 | chr2:179640224;179640223;179640222 |
Novex-1 | 2077 | 6454;6455;6456 | chr2:178775497;178775496;178775495 | chr2:179640224;179640223;179640222 |
Novex-2 | 2077 | 6454;6455;6456 | chr2:178775497;178775496;178775495 | chr2:179640224;179640223;179640222 |
Novex-3 | 2123 | 6592;6593;6594 | chr2:178775497;178775496;178775495 | chr2:179640224;179640223;179640222 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/L | rs530807674 | -0.264 | 1.0 | D | 0.689 | 0.768 | 0.704837425536 | gnomAD-2.1.1 | 1.42E-05 | None | None | None | None | N | None | 4.01E-05 | 0 | None | 0 | 0 | None | 6.53E-05 | None | 0 | 0 | 1.38812E-04 |
R/L | rs530807674 | -0.264 | 1.0 | D | 0.689 | 0.768 | 0.704837425536 | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 6.22148E-04 | 0 |
R/L | rs530807674 | -0.264 | 1.0 | D | 0.689 | 0.768 | 0.704837425536 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 1E-03 | None |
R/L | rs530807674 | -0.264 | 1.0 | D | 0.689 | 0.768 | 0.704837425536 | gnomAD-4.0.0 | 8.67428E-06 | None | None | None | None | N | None | 1.33298E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.31764E-04 | 1.59985E-05 |
R/Q | rs530807674 | -0.626 | 1.0 | D | 0.693 | 0.611 | None | gnomAD-2.1.1 | 3.19E-05 | None | None | None | None | N | None | 1.84593E-04 | 0 | None | 0 | 0 | None | 9.8E-05 | None | 0 | 1.76E-05 | 0 |
R/Q | rs530807674 | -0.626 | 1.0 | D | 0.693 | 0.611 | None | gnomAD-3.1.2 | 5.26E-05 | None | None | None | None | N | None | 1.93125E-04 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/Q | rs530807674 | -0.626 | 1.0 | D | 0.693 | 0.611 | None | gnomAD-4.0.0 | 2.2307E-05 | None | None | None | None | N | None | 2.80381E-04 | 0 | None | 0 | 6.69225E-05 | None | 0 | 0 | 8.47462E-06 | 2.19597E-05 | 0 |
R/W | rs777316854 | -0.586 | 1.0 | D | 0.7 | 0.756 | 0.663099739152 | gnomAD-2.1.1 | 3.19E-05 | None | None | None | None | N | None | 6.15E-05 | 2.9E-05 | None | 0 | 5.46E-05 | None | 3.27E-05 | None | 0 | 3.52E-05 | 0 |
R/W | rs777316854 | -0.586 | 1.0 | D | 0.7 | 0.756 | 0.663099739152 | gnomAD-3.1.2 | 3.94E-05 | None | None | None | None | N | None | 9.66E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
R/W | rs777316854 | -0.586 | 1.0 | D | 0.7 | 0.756 | 0.663099739152 | gnomAD-4.0.0 | 1.17732E-05 | None | None | None | None | N | None | 6.67735E-05 | 1.66778E-05 | None | 0 | 2.23035E-05 | None | 0 | 0 | 7.62711E-06 | 2.19602E-05 | 1.60046E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.7582 | likely_pathogenic | 0.7973 | pathogenic | -0.782 | Destabilizing | 0.999 | D | 0.557 | neutral | None | None | None | None | N |
R/C | 0.4991 | ambiguous | 0.5456 | ambiguous | -0.739 | Destabilizing | 1.0 | D | 0.701 | prob.neutral | None | None | None | None | N |
R/D | 0.8159 | likely_pathogenic | 0.8553 | pathogenic | 0.015 | Stabilizing | 1.0 | D | 0.713 | prob.delet. | None | None | None | None | N |
R/E | 0.6475 | likely_pathogenic | 0.6797 | pathogenic | 0.153 | Stabilizing | 0.999 | D | 0.581 | neutral | None | None | None | None | N |
R/F | 0.9273 | likely_pathogenic | 0.9332 | pathogenic | -0.576 | Destabilizing | 1.0 | D | 0.698 | prob.neutral | None | None | None | None | N |
R/G | 0.6158 | likely_pathogenic | 0.6838 | pathogenic | -1.105 | Destabilizing | 1.0 | D | 0.689 | prob.neutral | D | 0.619668964 | None | None | N |
R/H | 0.1905 | likely_benign | 0.2111 | benign | -1.372 | Destabilizing | 1.0 | D | 0.68 | prob.neutral | None | None | None | None | N |
R/I | 0.7285 | likely_pathogenic | 0.7208 | pathogenic | 0.089 | Stabilizing | 1.0 | D | 0.714 | prob.delet. | None | None | None | None | N |
R/K | 0.2146 | likely_benign | 0.2211 | benign | -0.732 | Destabilizing | 0.998 | D | 0.463 | neutral | None | None | None | None | N |
R/L | 0.6478 | likely_pathogenic | 0.6735 | pathogenic | 0.089 | Stabilizing | 1.0 | D | 0.689 | prob.neutral | D | 0.689467601 | None | None | N |
R/M | 0.7491 | likely_pathogenic | 0.7548 | pathogenic | -0.292 | Destabilizing | 1.0 | D | 0.692 | prob.neutral | None | None | None | None | N |
R/N | 0.7319 | likely_pathogenic | 0.7837 | pathogenic | -0.293 | Destabilizing | 1.0 | D | 0.703 | prob.neutral | None | None | None | None | N |
R/P | 0.9628 | likely_pathogenic | 0.972 | pathogenic | -0.18 | Destabilizing | 1.0 | D | 0.682 | prob.neutral | D | 0.632044053 | None | None | N |
R/Q | 0.187 | likely_benign | 0.2043 | benign | -0.408 | Destabilizing | 1.0 | D | 0.693 | prob.neutral | D | 0.633757835 | None | None | N |
R/S | 0.7576 | likely_pathogenic | 0.8045 | pathogenic | -1.071 | Destabilizing | 1.0 | D | 0.733 | prob.delet. | None | None | None | None | N |
R/T | 0.5421 | ambiguous | 0.5753 | pathogenic | -0.741 | Destabilizing | 1.0 | D | 0.731 | prob.delet. | None | None | None | None | N |
R/V | 0.7669 | likely_pathogenic | 0.7753 | pathogenic | -0.18 | Destabilizing | 1.0 | D | 0.709 | prob.delet. | None | None | None | None | N |
R/W | 0.6434 | likely_pathogenic | 0.6668 | pathogenic | -0.24 | Destabilizing | 1.0 | D | 0.7 | prob.neutral | D | 0.776595459 | None | None | N |
R/Y | 0.7846 | likely_pathogenic | 0.8097 | pathogenic | 0.052 | Stabilizing | 1.0 | D | 0.707 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.