Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 21306 | 64141;64142;64143 | chr2:178587295;178587294;178587293 | chr2:179452022;179452021;179452020 |
N2AB | 19665 | 59218;59219;59220 | chr2:178587295;178587294;178587293 | chr2:179452022;179452021;179452020 |
N2A | 18738 | 56437;56438;56439 | chr2:178587295;178587294;178587293 | chr2:179452022;179452021;179452020 |
N2B | 12241 | 36946;36947;36948 | chr2:178587295;178587294;178587293 | chr2:179452022;179452021;179452020 |
Novex-1 | 12366 | 37321;37322;37323 | chr2:178587295;178587294;178587293 | chr2:179452022;179452021;179452020 |
Novex-2 | 12433 | 37522;37523;37524 | chr2:178587295;178587294;178587293 | chr2:179452022;179452021;179452020 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs773942316 | -1.667 | 1.0 | N | 0.898 | 0.46 | 0.590936018357 | gnomAD-2.1.1 | 3.23E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 2.28818E-04 | None | 0 | 8.94E-06 | 0 |
R/C | rs773942316 | -1.667 | 1.0 | N | 0.898 | 0.46 | 0.590936018357 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 2.07727E-04 | 0 |
R/C | rs773942316 | -1.667 | 1.0 | N | 0.898 | 0.46 | 0.590936018357 | gnomAD-4.0.0 | 1.98411E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 4.23924E-06 | 2.85513E-04 | 1.60226E-05 |
R/H | rs202240487 | -2.232 | 1.0 | N | 0.76 | 0.445 | None | gnomAD-2.1.1 | 1.53426E-03 | None | None | None | None | N | None | 4.14E-05 | 2.84E-05 | None | 0 | 0 | None | 1.33041E-02 | None | 0 | 1.33578E-04 | 2.81532E-04 |
R/H | rs202240487 | -2.232 | 1.0 | N | 0.76 | 0.445 | None | gnomAD-3.1.2 | 5.00013E-04 | None | None | None | None | N | None | 4.83E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47124E-04 | 1.3278E-02 | 0 |
R/H | rs202240487 | -2.232 | 1.0 | N | 0.76 | 0.445 | None | 1000 genomes | 3.19489E-03 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 1.64E-02 | None |
R/H | rs202240487 | -2.232 | 1.0 | N | 0.76 | 0.445 | None | gnomAD-4.0.0 | 9.64633E-04 | None | None | None | None | N | None | 6.67022E-05 | 6.672E-05 | None | 0 | 0 | None | 0 | 0 | 2.56895E-04 | 1.31556E-02 | 7.36731E-04 |
R/L | rs202240487 | -0.935 | 1.0 | N | 0.78 | 0.507 | 0.573237765134 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | N | None | 6.47E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
R/L | rs202240487 | -0.935 | 1.0 | N | 0.78 | 0.507 | 0.573237765134 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | N | None | 4.83E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/L | rs202240487 | -0.935 | 1.0 | N | 0.78 | 0.507 | 0.573237765134 | gnomAD-4.0.0 | 3.09994E-06 | None | None | None | None | N | None | 4.00855E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 3.20431E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.9854 | likely_pathogenic | 0.983 | pathogenic | -2.339 | Highly Destabilizing | 0.999 | D | 0.539 | neutral | None | None | None | None | N |
R/C | 0.7137 | likely_pathogenic | 0.6754 | pathogenic | -2.044 | Highly Destabilizing | 1.0 | D | 0.898 | deleterious | N | 0.470714129 | None | None | N |
R/D | 0.9984 | likely_pathogenic | 0.9982 | pathogenic | -0.928 | Destabilizing | 1.0 | D | 0.874 | deleterious | None | None | None | None | N |
R/E | 0.9753 | likely_pathogenic | 0.9714 | pathogenic | -0.709 | Destabilizing | 0.999 | D | 0.526 | neutral | None | None | None | None | N |
R/F | 0.9853 | likely_pathogenic | 0.9803 | pathogenic | -1.579 | Destabilizing | 1.0 | D | 0.901 | deleterious | None | None | None | None | N |
R/G | 0.9687 | likely_pathogenic | 0.9632 | pathogenic | -2.673 | Highly Destabilizing | 1.0 | D | 0.78 | deleterious | N | 0.498604527 | None | None | N |
R/H | 0.594 | likely_pathogenic | 0.5444 | ambiguous | -2.353 | Highly Destabilizing | 1.0 | D | 0.76 | deleterious | N | 0.50684696 | None | None | N |
R/I | 0.9753 | likely_pathogenic | 0.9757 | pathogenic | -1.357 | Destabilizing | 1.0 | D | 0.911 | deleterious | None | None | None | None | N |
R/K | 0.2961 | likely_benign | 0.2723 | benign | -1.334 | Destabilizing | 0.998 | D | 0.459 | neutral | None | None | None | None | N |
R/L | 0.9146 | likely_pathogenic | 0.9184 | pathogenic | -1.357 | Destabilizing | 1.0 | D | 0.78 | deleterious | N | 0.488627347 | None | None | N |
R/M | 0.921 | likely_pathogenic | 0.9167 | pathogenic | -1.773 | Destabilizing | 1.0 | D | 0.856 | deleterious | None | None | None | None | N |
R/N | 0.9937 | likely_pathogenic | 0.992 | pathogenic | -1.307 | Destabilizing | 1.0 | D | 0.695 | prob.neutral | None | None | None | None | N |
R/P | 0.9993 | likely_pathogenic | 0.9994 | pathogenic | -1.677 | Destabilizing | 1.0 | D | 0.885 | deleterious | D | 0.532926933 | None | None | N |
R/Q | 0.5005 | ambiguous | 0.4364 | ambiguous | -1.248 | Destabilizing | 1.0 | D | 0.674 | neutral | None | None | None | None | N |
R/S | 0.9946 | likely_pathogenic | 0.9932 | pathogenic | -2.338 | Highly Destabilizing | 1.0 | D | 0.774 | deleterious | N | 0.477458398 | None | None | N |
R/T | 0.988 | likely_pathogenic | 0.9868 | pathogenic | -1.904 | Destabilizing | 1.0 | D | 0.767 | deleterious | None | None | None | None | N |
R/V | 0.9786 | likely_pathogenic | 0.9773 | pathogenic | -1.677 | Destabilizing | 1.0 | D | 0.89 | deleterious | None | None | None | None | N |
R/W | 0.8497 | likely_pathogenic | 0.8162 | pathogenic | -0.982 | Destabilizing | 1.0 | D | 0.884 | deleterious | None | None | None | None | N |
R/Y | 0.948 | likely_pathogenic | 0.9269 | pathogenic | -0.91 | Destabilizing | 1.0 | D | 0.911 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.