Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 2143 | 6652;6653;6654 | chr2:178775437;178775436;178775435 | chr2:179640164;179640163;179640162 |
N2AB | 2143 | 6652;6653;6654 | chr2:178775437;178775436;178775435 | chr2:179640164;179640163;179640162 |
N2A | 2143 | 6652;6653;6654 | chr2:178775437;178775436;178775435 | chr2:179640164;179640163;179640162 |
N2B | 2097 | 6514;6515;6516 | chr2:178775437;178775436;178775435 | chr2:179640164;179640163;179640162 |
Novex-1 | 2097 | 6514;6515;6516 | chr2:178775437;178775436;178775435 | chr2:179640164;179640163;179640162 |
Novex-2 | 2097 | 6514;6515;6516 | chr2:178775437;178775436;178775435 | chr2:179640164;179640163;179640162 |
Novex-3 | 2143 | 6652;6653;6654 | chr2:178775437;178775436;178775435 | chr2:179640164;179640163;179640162 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/V | rs1561277273 | None | 0.009 | N | 0.231 | 0.271 | 0.378322506985 | gnomAD-2.1.1 | 3.98E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.82E-06 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/C | 0.5075 | ambiguous | 0.6122 | pathogenic | -0.715 | Destabilizing | 0.968 | D | 0.399 | neutral | None | None | None | None | N |
A/D | 0.3142 | likely_benign | 0.4192 | ambiguous | -0.639 | Destabilizing | 0.497 | N | 0.52 | neutral | D | 0.572259763 | None | None | N |
A/E | 0.2609 | likely_benign | 0.3307 | benign | -0.803 | Destabilizing | 0.567 | D | 0.344 | neutral | None | None | None | None | N |
A/F | 0.3097 | likely_benign | 0.3935 | ambiguous | -1.039 | Destabilizing | 0.726 | D | 0.551 | neutral | None | None | None | None | N |
A/G | 0.1306 | likely_benign | 0.155 | benign | -0.421 | Destabilizing | 0.124 | N | 0.378 | neutral | D | 0.534384836 | None | None | N |
A/H | 0.462 | ambiguous | 0.5615 | ambiguous | -0.462 | Destabilizing | 0.968 | D | 0.56 | neutral | None | None | None | None | N |
A/I | 0.1561 | likely_benign | 0.1975 | benign | -0.436 | Destabilizing | 0.396 | N | 0.355 | neutral | None | None | None | None | N |
A/K | 0.4534 | ambiguous | 0.5576 | ambiguous | -0.65 | Destabilizing | 0.567 | D | 0.353 | neutral | None | None | None | None | N |
A/L | 0.1347 | likely_benign | 0.1624 | benign | -0.436 | Destabilizing | 0.157 | N | 0.359 | neutral | None | None | None | None | N |
A/M | 0.1612 | likely_benign | 0.1948 | benign | -0.33 | Destabilizing | 0.909 | D | 0.429 | neutral | None | None | None | None | N |
A/N | 0.1977 | likely_benign | 0.2413 | benign | -0.296 | Destabilizing | 0.567 | D | 0.54 | neutral | None | None | None | None | N |
A/P | 0.1619 | likely_benign | 0.1985 | benign | -0.381 | Destabilizing | 0.002 | N | 0.26 | neutral | N | 0.449700225 | None | None | N |
A/Q | 0.3147 | likely_benign | 0.3751 | ambiguous | -0.631 | Destabilizing | 0.726 | D | 0.401 | neutral | None | None | None | None | N |
A/R | 0.454 | ambiguous | 0.5586 | ambiguous | -0.136 | Destabilizing | 0.567 | D | 0.406 | neutral | None | None | None | None | N |
A/S | 0.0816 | likely_benign | 0.0883 | benign | -0.484 | Destabilizing | 0.009 | N | 0.239 | neutral | D | 0.525146069 | None | None | N |
A/T | 0.0765 | likely_benign | 0.0845 | benign | -0.576 | Destabilizing | 0.124 | N | 0.381 | neutral | D | 0.534930137 | None | None | N |
A/V | 0.0929 | likely_benign | 0.111 | benign | -0.381 | Destabilizing | 0.009 | N | 0.231 | neutral | N | 0.515686195 | None | None | N |
A/W | 0.6988 | likely_pathogenic | 0.7941 | pathogenic | -1.155 | Destabilizing | 0.968 | D | 0.659 | neutral | None | None | None | None | N |
A/Y | 0.4507 | ambiguous | 0.5579 | ambiguous | -0.808 | Destabilizing | 0.89 | D | 0.55 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.