Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 2167 | 6724;6725;6726 | chr2:178775365;178775364;178775363 | chr2:179640092;179640091;179640090 |
N2AB | 2167 | 6724;6725;6726 | chr2:178775365;178775364;178775363 | chr2:179640092;179640091;179640090 |
N2A | 2167 | 6724;6725;6726 | chr2:178775365;178775364;178775363 | chr2:179640092;179640091;179640090 |
N2B | 2121 | 6586;6587;6588 | chr2:178775365;178775364;178775363 | chr2:179640092;179640091;179640090 |
Novex-1 | 2121 | 6586;6587;6588 | chr2:178775365;178775364;178775363 | chr2:179640092;179640091;179640090 |
Novex-2 | 2121 | 6586;6587;6588 | chr2:178775365;178775364;178775363 | chr2:179640092;179640091;179640090 |
Novex-3 | 2167 | 6724;6725;6726 | chr2:178775365;178775364;178775363 | chr2:179640092;179640091;179640090 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | None | None | 1.0 | N | 0.654 | 0.342 | 0.798223434742 | gnomAD-4.0.0 | 2.05238E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.52092E-05 | None | 0 | 0 | 1.79861E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.8586 | likely_pathogenic | 0.9169 | pathogenic | -1.235 | Destabilizing | 0.999 | D | 0.713 | prob.delet. | None | None | None | None | N |
L/C | 0.9611 | likely_pathogenic | 0.9782 | pathogenic | -0.887 | Destabilizing | 1.0 | D | 0.657 | neutral | None | None | None | None | N |
L/D | 0.9894 | likely_pathogenic | 0.9947 | pathogenic | -0.348 | Destabilizing | 1.0 | D | 0.753 | deleterious | None | None | None | None | N |
L/E | 0.9556 | likely_pathogenic | 0.9769 | pathogenic | -0.377 | Destabilizing | 1.0 | D | 0.771 | deleterious | None | None | None | None | N |
L/F | 0.6629 | likely_pathogenic | 0.7831 | pathogenic | -0.883 | Destabilizing | 1.0 | D | 0.654 | neutral | N | 0.502675408 | None | None | N |
L/G | 0.9732 | likely_pathogenic | 0.9865 | pathogenic | -1.504 | Destabilizing | 1.0 | D | 0.767 | deleterious | None | None | None | None | N |
L/H | 0.8697 | likely_pathogenic | 0.9238 | pathogenic | -0.666 | Destabilizing | 1.0 | D | 0.728 | prob.delet. | N | 0.509954182 | None | None | N |
L/I | 0.3288 | likely_benign | 0.4244 | ambiguous | -0.602 | Destabilizing | 0.999 | D | 0.485 | neutral | N | 0.494514319 | None | None | N |
L/K | 0.8897 | likely_pathogenic | 0.9275 | pathogenic | -0.693 | Destabilizing | 1.0 | D | 0.748 | deleterious | None | None | None | None | N |
L/M | 0.3994 | ambiguous | 0.4837 | ambiguous | -0.531 | Destabilizing | 1.0 | D | 0.633 | neutral | None | None | None | None | N |
L/N | 0.9349 | likely_pathogenic | 0.9645 | pathogenic | -0.517 | Destabilizing | 1.0 | D | 0.757 | deleterious | None | None | None | None | N |
L/P | 0.9907 | likely_pathogenic | 0.9952 | pathogenic | -0.779 | Destabilizing | 1.0 | D | 0.758 | deleterious | D | 0.616915564 | None | None | N |
L/Q | 0.8238 | likely_pathogenic | 0.897 | pathogenic | -0.71 | Destabilizing | 1.0 | D | 0.749 | deleterious | None | None | None | None | N |
L/R | 0.819 | likely_pathogenic | 0.8783 | pathogenic | -0.14 | Destabilizing | 1.0 | D | 0.766 | deleterious | N | 0.501397917 | None | None | N |
L/S | 0.9386 | likely_pathogenic | 0.9704 | pathogenic | -1.153 | Destabilizing | 1.0 | D | 0.753 | deleterious | None | None | None | None | N |
L/T | 0.8418 | likely_pathogenic | 0.9053 | pathogenic | -1.065 | Destabilizing | 1.0 | D | 0.763 | deleterious | None | None | None | None | N |
L/V | 0.3848 | ambiguous | 0.5153 | ambiguous | -0.779 | Destabilizing | 0.999 | D | 0.527 | neutral | N | 0.500082925 | None | None | N |
L/W | 0.8882 | likely_pathogenic | 0.9398 | pathogenic | -0.885 | Destabilizing | 1.0 | D | 0.721 | prob.delet. | None | None | None | None | N |
L/Y | 0.8998 | likely_pathogenic | 0.9411 | pathogenic | -0.651 | Destabilizing | 1.0 | D | 0.728 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.