Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 21725 | 65398;65399;65400 | chr2:178584378;178584377;178584376 | chr2:179449105;179449104;179449103 |
N2AB | 20084 | 60475;60476;60477 | chr2:178584378;178584377;178584376 | chr2:179449105;179449104;179449103 |
N2A | 19157 | 57694;57695;57696 | chr2:178584378;178584377;178584376 | chr2:179449105;179449104;179449103 |
N2B | 12660 | 38203;38204;38205 | chr2:178584378;178584377;178584376 | chr2:179449105;179449104;179449103 |
Novex-1 | 12785 | 38578;38579;38580 | chr2:178584378;178584377;178584376 | chr2:179449105;179449104;179449103 |
Novex-2 | 12852 | 38779;38780;38781 | chr2:178584378;178584377;178584376 | chr2:179449105;179449104;179449103 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | rs543828787 | -1.257 | 0.334 | N | 0.357 | 0.223 | 0.545173277474 | gnomAD-2.1.1 | 1.20937E-04 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 9.81033E-04 | None | 0 | 0 | 0 |
V/A | rs543828787 | -1.257 | 0.334 | N | 0.357 | 0.223 | 0.545173277474 | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 8.28844E-04 | 0 |
V/A | rs543828787 | -1.257 | 0.334 | N | 0.357 | 0.223 | 0.545173277474 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 1E-03 | None |
V/A | rs543828787 | -1.257 | 0.334 | N | 0.357 | 0.223 | 0.545173277474 | gnomAD-4.0.0 | 6.07453E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 9.88598E-04 | 1.2809E-04 |
V/I | rs368716894 | -0.395 | 0.002 | N | 0.104 | 0.085 | None | gnomAD-2.1.1 | 2.86E-05 | None | None | None | None | N | None | 4.13E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 5.49E-05 | 0 |
V/I | rs368716894 | -0.395 | 0.002 | N | 0.104 | 0.085 | None | gnomAD-3.1.2 | 3.95E-05 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 7.35E-05 | 0 | 0 |
V/I | rs368716894 | -0.395 | 0.002 | N | 0.104 | 0.085 | None | gnomAD-4.0.0 | 7.19086E-05 | None | None | None | None | N | None | 2.67051E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 8.98701E-05 | 0 | 1.28135E-04 |
V/L | rs368716894 | None | 0.036 | N | 0.231 | 0.05 | 0.211220785272 | gnomAD-4.0.0 | 3.4221E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 4.49844E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.2375 | likely_benign | 0.1845 | benign | -0.928 | Destabilizing | 0.334 | N | 0.357 | neutral | N | 0.483078149 | None | None | N |
V/C | 0.7583 | likely_pathogenic | 0.6736 | pathogenic | -0.903 | Destabilizing | 0.992 | D | 0.439 | neutral | None | None | None | None | N |
V/D | 0.6356 | likely_pathogenic | 0.485 | ambiguous | -0.411 | Destabilizing | 0.972 | D | 0.499 | neutral | None | None | None | None | N |
V/E | 0.468 | ambiguous | 0.3548 | ambiguous | -0.44 | Destabilizing | 0.963 | D | 0.464 | neutral | N | 0.439593944 | None | None | N |
V/F | 0.2636 | likely_benign | 0.1982 | benign | -0.715 | Destabilizing | 0.85 | D | 0.418 | neutral | None | None | None | None | N |
V/G | 0.3741 | ambiguous | 0.3004 | benign | -1.177 | Destabilizing | 0.896 | D | 0.447 | neutral | N | 0.474989636 | None | None | N |
V/H | 0.7071 | likely_pathogenic | 0.5678 | pathogenic | -0.492 | Destabilizing | 0.992 | D | 0.489 | neutral | None | None | None | None | N |
V/I | 0.0785 | likely_benign | 0.0712 | benign | -0.377 | Destabilizing | 0.002 | N | 0.104 | neutral | N | 0.368216635 | None | None | N |
V/K | 0.5799 | likely_pathogenic | 0.4376 | ambiguous | -0.777 | Destabilizing | 0.92 | D | 0.441 | neutral | None | None | None | None | N |
V/L | 0.1722 | likely_benign | 0.1421 | benign | -0.377 | Destabilizing | 0.036 | N | 0.231 | neutral | N | 0.428859662 | None | None | N |
V/M | 0.1402 | likely_benign | 0.1198 | benign | -0.517 | Destabilizing | 0.059 | N | 0.215 | neutral | None | None | None | None | N |
V/N | 0.4177 | ambiguous | 0.3029 | benign | -0.642 | Destabilizing | 0.972 | D | 0.491 | neutral | None | None | None | None | N |
V/P | 0.7446 | likely_pathogenic | 0.5768 | pathogenic | -0.525 | Destabilizing | 0.972 | D | 0.481 | neutral | None | None | None | None | N |
V/Q | 0.4058 | ambiguous | 0.3164 | benign | -0.781 | Destabilizing | 0.92 | D | 0.476 | neutral | None | None | None | None | N |
V/R | 0.4857 | ambiguous | 0.3353 | benign | -0.273 | Destabilizing | 0.92 | D | 0.493 | neutral | None | None | None | None | N |
V/S | 0.2976 | likely_benign | 0.2239 | benign | -1.154 | Destabilizing | 0.92 | D | 0.417 | neutral | None | None | None | None | N |
V/T | 0.1936 | likely_benign | 0.1516 | benign | -1.061 | Destabilizing | 0.617 | D | 0.324 | neutral | None | None | None | None | N |
V/W | 0.8456 | likely_pathogenic | 0.7538 | pathogenic | -0.818 | Destabilizing | 0.992 | D | 0.552 | neutral | None | None | None | None | N |
V/Y | 0.6781 | likely_pathogenic | 0.5452 | ambiguous | -0.531 | Destabilizing | 0.92 | D | 0.449 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.