Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 22058 | 66397;66398;66399 | chr2:178582197;178582196;178582195 | chr2:179446924;179446923;179446922 |
N2AB | 20417 | 61474;61475;61476 | chr2:178582197;178582196;178582195 | chr2:179446924;179446923;179446922 |
N2A | 19490 | 58693;58694;58695 | chr2:178582197;178582196;178582195 | chr2:179446924;179446923;179446922 |
N2B | 12993 | 39202;39203;39204 | chr2:178582197;178582196;178582195 | chr2:179446924;179446923;179446922 |
Novex-1 | 13118 | 39577;39578;39579 | chr2:178582197;178582196;178582195 | chr2:179446924;179446923;179446922 |
Novex-2 | 13185 | 39778;39779;39780 | chr2:178582197;178582196;178582195 | chr2:179446924;179446923;179446922 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs199643269 | -0.454 | 0.997 | N | 0.341 | 0.284 | None | gnomAD-2.1.1 | 1.113E-04 | None | None | None | None | N | None | 7.96579E-04 | 6.08E-05 | None | 0 | 0 | None | 7.17E-05 | None | 0 | 4.82E-05 | 1.44844E-04 |
R/C | rs199643269 | -0.454 | 0.997 | N | 0.341 | 0.284 | None | gnomAD-3.1.2 | 3.88224E-04 | None | None | None | None | N | None | 1.30365E-03 | 6.57E-05 | 0 | 0 | 0 | None | 0 | 0 | 4.41E-05 | 0 | 4.78927E-04 |
R/C | rs199643269 | -0.454 | 0.997 | N | 0.341 | 0.284 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
R/C | rs199643269 | -0.454 | 0.997 | N | 0.341 | 0.284 | None | gnomAD-4.0.0 | 8.41867E-05 | None | None | None | None | N | None | 1.18784E-03 | 8.75289E-05 | None | 0 | 0 | None | 0 | 0 | 2.63325E-05 | 5.65713E-05 | 9.66713E-05 |
R/H | rs753077711 | -1.206 | 0.971 | N | 0.381 | 0.206 | 0.306053231325 | gnomAD-2.1.1 | 3.19E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 6.48E-05 | 0 |
R/H | rs753077711 | -1.206 | 0.971 | N | 0.381 | 0.206 | 0.306053231325 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/H | rs753077711 | -1.206 | 0.971 | N | 0.381 | 0.206 | 0.306053231325 | gnomAD-4.0.0 | 3.73232E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.23774E-05 | None | 0 | 0 | 1.69746E-06 | 3.35751E-05 | 0 |
R/L | rs753077711 | 0.055 | 0.465 | N | 0.325 | 0.168 | 0.371157983038 | gnomAD-2.1.1 | 4.13E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 9.09E-06 | 0 |
R/L | rs753077711 | 0.055 | 0.465 | N | 0.325 | 0.168 | 0.371157983038 | gnomAD-4.0.0 | 2.06103E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.70212E-06 | 0 | 0 |
R/S | None | None | 0.465 | N | 0.244 | 0.235 | 0.268660756437 | gnomAD-4.0.0 | 1.3779E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.80296E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.2318 | likely_benign | 0.2043 | benign | -0.062 | Destabilizing | 0.165 | N | 0.215 | neutral | None | None | None | None | N |
R/C | 0.1381 | likely_benign | 0.1132 | benign | -0.041 | Destabilizing | 0.997 | D | 0.341 | neutral | N | 0.48819318 | None | None | N |
R/D | 0.6469 | likely_pathogenic | 0.5886 | pathogenic | -0.033 | Destabilizing | 0.312 | N | 0.381 | neutral | None | None | None | None | N |
R/E | 0.3423 | ambiguous | 0.3088 | benign | 0.016 | Stabilizing | 0.185 | N | 0.155 | neutral | None | None | None | None | N |
R/F | 0.5282 | ambiguous | 0.4676 | ambiguous | -0.328 | Destabilizing | 0.96 | D | 0.44 | neutral | None | None | None | None | N |
R/G | 0.248 | likely_benign | 0.2025 | benign | -0.242 | Destabilizing | 0.465 | N | 0.313 | neutral | N | 0.477072109 | None | None | N |
R/H | 0.1249 | likely_benign | 0.1114 | benign | -0.749 | Destabilizing | 0.971 | D | 0.381 | neutral | N | 0.506778941 | None | None | N |
R/I | 0.223 | likely_benign | 0.2039 | benign | 0.375 | Stabilizing | 0.887 | D | 0.514 | neutral | None | None | None | None | N |
R/K | 0.0969 | likely_benign | 0.0993 | benign | -0.009 | Destabilizing | 0.001 | N | 0.091 | neutral | None | None | None | None | N |
R/L | 0.227 | likely_benign | 0.2082 | benign | 0.375 | Stabilizing | 0.465 | N | 0.325 | neutral | N | 0.468393911 | None | None | N |
R/M | 0.2577 | likely_benign | 0.2355 | benign | 0.094 | Stabilizing | 0.96 | D | 0.424 | neutral | None | None | None | None | N |
R/N | 0.4785 | ambiguous | 0.4463 | ambiguous | 0.356 | Stabilizing | 0.524 | D | 0.284 | neutral | None | None | None | None | N |
R/P | 0.1359 | likely_benign | 0.1291 | benign | 0.249 | Stabilizing | 0.001 | N | 0.074 | neutral | N | 0.359068716 | None | None | N |
R/Q | 0.0964 | likely_benign | 0.0895 | benign | 0.178 | Stabilizing | 0.018 | N | 0.13 | neutral | None | None | None | None | N |
R/S | 0.3595 | ambiguous | 0.3149 | benign | -0.047 | Destabilizing | 0.465 | N | 0.244 | neutral | N | 0.437687002 | None | None | N |
R/T | 0.2307 | likely_benign | 0.2055 | benign | 0.127 | Stabilizing | 0.312 | N | 0.289 | neutral | None | None | None | None | N |
R/V | 0.2807 | likely_benign | 0.2563 | benign | 0.249 | Stabilizing | 0.691 | D | 0.507 | neutral | None | None | None | None | N |
R/W | 0.3011 | likely_benign | 0.2547 | benign | -0.358 | Destabilizing | 0.989 | D | 0.338 | neutral | None | None | None | None | N |
R/Y | 0.4028 | ambiguous | 0.3508 | ambiguous | 0.049 | Stabilizing | 0.96 | D | 0.507 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.