Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 22109 | 66550;66551;66552 | chr2:178582044;178582043;178582042 | chr2:179446771;179446770;179446769 |
N2AB | 20468 | 61627;61628;61629 | chr2:178582044;178582043;178582042 | chr2:179446771;179446770;179446769 |
N2A | 19541 | 58846;58847;58848 | chr2:178582044;178582043;178582042 | chr2:179446771;179446770;179446769 |
N2B | 13044 | 39355;39356;39357 | chr2:178582044;178582043;178582042 | chr2:179446771;179446770;179446769 |
Novex-1 | 13169 | 39730;39731;39732 | chr2:178582044;178582043;178582042 | chr2:179446771;179446770;179446769 |
Novex-2 | 13236 | 39931;39932;39933 | chr2:178582044;178582043;178582042 | chr2:179446771;179446770;179446769 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/L | rs777960621 | -0.235 | 0.935 | N | 0.701 | 0.357 | None | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
P/L | rs777960621 | -0.235 | 0.935 | N | 0.701 | 0.357 | None | gnomAD-4.0.0 | 6.15947E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 7.19755E-06 | 1.15947E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/A | 0.1568 | likely_benign | 0.1414 | benign | -1.073 | Destabilizing | 0.025 | N | 0.303 | neutral | N | 0.497354168 | None | None | N |
P/C | 0.7649 | likely_pathogenic | 0.7338 | pathogenic | -0.701 | Destabilizing | 0.997 | D | 0.771 | deleterious | None | None | None | None | N |
P/D | 0.9132 | likely_pathogenic | 0.852 | pathogenic | -0.72 | Destabilizing | 0.975 | D | 0.623 | neutral | None | None | None | None | N |
P/E | 0.7824 | likely_pathogenic | 0.6711 | pathogenic | -0.757 | Destabilizing | 0.845 | D | 0.575 | neutral | None | None | None | None | N |
P/F | 0.8535 | likely_pathogenic | 0.8031 | pathogenic | -0.858 | Destabilizing | 0.997 | D | 0.759 | deleterious | None | None | None | None | N |
P/G | 0.6799 | likely_pathogenic | 0.6243 | pathogenic | -1.339 | Destabilizing | 0.845 | D | 0.607 | neutral | None | None | None | None | N |
P/H | 0.6425 | likely_pathogenic | 0.5473 | ambiguous | -0.839 | Destabilizing | 0.995 | D | 0.708 | prob.delet. | N | 0.503337787 | None | None | N |
P/I | 0.5142 | ambiguous | 0.4502 | ambiguous | -0.469 | Destabilizing | 0.975 | D | 0.781 | deleterious | None | None | None | None | N |
P/K | 0.8677 | likely_pathogenic | 0.7678 | pathogenic | -0.919 | Destabilizing | 0.845 | D | 0.603 | neutral | None | None | None | None | N |
P/L | 0.2706 | likely_benign | 0.2209 | benign | -0.469 | Destabilizing | 0.935 | D | 0.701 | prob.neutral | N | 0.46758335 | None | None | N |
P/M | 0.4993 | ambiguous | 0.4352 | ambiguous | -0.362 | Destabilizing | 0.999 | D | 0.709 | prob.delet. | None | None | None | None | N |
P/N | 0.6849 | likely_pathogenic | 0.6072 | pathogenic | -0.656 | Destabilizing | 0.987 | D | 0.751 | deleterious | None | None | None | None | N |
P/Q | 0.518 | ambiguous | 0.4354 | ambiguous | -0.842 | Destabilizing | 0.496 | N | 0.369 | neutral | None | None | None | None | N |
P/R | 0.7689 | likely_pathogenic | 0.6472 | pathogenic | -0.387 | Destabilizing | 0.967 | D | 0.758 | deleterious | N | 0.483949177 | None | None | N |
P/S | 0.3861 | ambiguous | 0.3337 | benign | -1.141 | Destabilizing | 0.805 | D | 0.567 | neutral | N | 0.512880981 | None | None | N |
P/T | 0.2439 | likely_benign | 0.1972 | benign | -1.07 | Destabilizing | 0.967 | D | 0.627 | neutral | N | 0.471154975 | None | None | N |
P/V | 0.3539 | ambiguous | 0.3031 | benign | -0.633 | Destabilizing | 0.95 | D | 0.642 | neutral | None | None | None | None | N |
P/W | 0.9291 | likely_pathogenic | 0.8928 | pathogenic | -1.009 | Destabilizing | 0.999 | D | 0.744 | deleterious | None | None | None | None | N |
P/Y | 0.7897 | likely_pathogenic | 0.707 | pathogenic | -0.723 | Destabilizing | 0.996 | D | 0.771 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.