Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 22115 | 66568;66569;66570 | chr2:178582026;178582025;178582024 | chr2:179446753;179446752;179446751 |
N2AB | 20474 | 61645;61646;61647 | chr2:178582026;178582025;178582024 | chr2:179446753;179446752;179446751 |
N2A | 19547 | 58864;58865;58866 | chr2:178582026;178582025;178582024 | chr2:179446753;179446752;179446751 |
N2B | 13050 | 39373;39374;39375 | chr2:178582026;178582025;178582024 | chr2:179446753;179446752;179446751 |
Novex-1 | 13175 | 39748;39749;39750 | chr2:178582026;178582025;178582024 | chr2:179446753;179446752;179446751 |
Novex-2 | 13242 | 39949;39950;39951 | chr2:178582026;178582025;178582024 | chr2:179446753;179446752;179446751 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs371010572 | None | 0.317 | N | 0.461 | 0.049 | 0.180583059064 | gnomAD-2.1.1 | 3.19E-05 | None | None | None | None | I | None | 1.14837E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
L/F | rs371010572 | None | 0.317 | N | 0.461 | 0.049 | 0.180583059064 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | I | None | 4.83E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
L/F | rs371010572 | None | 0.317 | N | 0.461 | 0.049 | 0.180583059064 | gnomAD-4.0.0 | 3.84555E-06 | None | None | None | None | I | None | 5.07872E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.3141 | likely_benign | 0.3407 | ambiguous | -2.026 | Highly Destabilizing | 0.035 | N | 0.457 | neutral | None | None | None | None | I |
L/C | 0.446 | ambiguous | 0.4739 | ambiguous | -1.417 | Destabilizing | 0.824 | D | 0.513 | neutral | None | None | None | None | I |
L/D | 0.9231 | likely_pathogenic | 0.9324 | pathogenic | -1.488 | Destabilizing | 0.555 | D | 0.619 | neutral | None | None | None | None | I |
L/E | 0.6621 | likely_pathogenic | 0.7035 | pathogenic | -1.307 | Destabilizing | 0.555 | D | 0.607 | neutral | None | None | None | None | I |
L/F | 0.136 | likely_benign | 0.1445 | benign | -1.095 | Destabilizing | 0.317 | N | 0.461 | neutral | N | 0.410601975 | None | None | I |
L/G | 0.6957 | likely_pathogenic | 0.7279 | pathogenic | -2.535 | Highly Destabilizing | 0.555 | D | 0.612 | neutral | None | None | None | None | I |
L/H | 0.4254 | ambiguous | 0.4112 | ambiguous | -1.823 | Destabilizing | 0.935 | D | 0.631 | neutral | None | None | None | None | I |
L/I | 0.0877 | likely_benign | 0.0913 | benign | -0.602 | Destabilizing | None | N | 0.112 | neutral | N | 0.433729551 | None | None | I |
L/K | 0.561 | ambiguous | 0.5835 | pathogenic | -1.478 | Destabilizing | 0.555 | D | 0.581 | neutral | None | None | None | None | I |
L/M | 0.1001 | likely_benign | 0.1068 | benign | -0.587 | Destabilizing | 0.38 | N | 0.484 | neutral | None | None | None | None | I |
L/N | 0.6168 | likely_pathogenic | 0.6562 | pathogenic | -1.661 | Destabilizing | 0.791 | D | 0.65 | neutral | None | None | None | None | I |
L/P | 0.973 | likely_pathogenic | 0.9713 | pathogenic | -1.051 | Destabilizing | 0.791 | D | 0.622 | neutral | None | None | None | None | I |
L/Q | 0.2967 | likely_benign | 0.2987 | benign | -1.541 | Destabilizing | 0.791 | D | 0.603 | neutral | None | None | None | None | I |
L/R | 0.5287 | ambiguous | 0.5153 | ambiguous | -1.221 | Destabilizing | 0.555 | D | 0.607 | neutral | None | None | None | None | I |
L/S | 0.473 | ambiguous | 0.4975 | ambiguous | -2.451 | Highly Destabilizing | 0.117 | N | 0.577 | neutral | N | 0.475055769 | None | None | I |
L/T | 0.3389 | likely_benign | 0.364 | ambiguous | -2.115 | Highly Destabilizing | 0.081 | N | 0.478 | neutral | None | None | None | None | I |
L/V | 0.0898 | likely_benign | 0.0974 | benign | -1.051 | Destabilizing | None | N | 0.151 | neutral | N | 0.450656299 | None | None | I |
L/W | 0.4448 | ambiguous | 0.4267 | ambiguous | -1.349 | Destabilizing | 0.935 | D | 0.653 | neutral | None | None | None | None | I |
L/Y | 0.3739 | ambiguous | 0.3783 | ambiguous | -1.053 | Destabilizing | 0.555 | D | 0.516 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.