Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 2223 | 6892;6893;6894 | chr2:178775044;178775043;178775042 | chr2:179639771;179639770;179639769 |
N2AB | 2223 | 6892;6893;6894 | chr2:178775044;178775043;178775042 | chr2:179639771;179639770;179639769 |
N2A | 2223 | 6892;6893;6894 | chr2:178775044;178775043;178775042 | chr2:179639771;179639770;179639769 |
N2B | 2177 | 6754;6755;6756 | chr2:178775044;178775043;178775042 | chr2:179639771;179639770;179639769 |
Novex-1 | 2177 | 6754;6755;6756 | chr2:178775044;178775043;178775042 | chr2:179639771;179639770;179639769 |
Novex-2 | 2177 | 6754;6755;6756 | chr2:178775044;178775043;178775042 | chr2:179639771;179639770;179639769 |
Novex-3 | 2223 | 6892;6893;6894 | chr2:178775044;178775043;178775042 | chr2:179639771;179639770;179639769 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
H/L | rs372979075 | 0.777 | 0.008 | N | 0.424 | 0.372 | 0.51098835382 | gnomAD-2.1.1 | 6.72E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 6.53201E-04 | None | 1.96002E-04 | None | 0 | 0 | 0 |
H/L | rs372979075 | 0.777 | 0.008 | N | 0.424 | 0.372 | 0.51098835382 | gnomAD-3.1.2 | 5.26E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 1.15518E-03 | None | 0 | 0 | 0 | 2.07297E-04 | 4.78011E-04 |
H/L | rs372979075 | 0.777 | 0.008 | N | 0.424 | 0.372 | 0.51098835382 | 1000 genomes | 3.99361E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 2E-03 | 0 | None | None | None | 0 | None |
H/L | rs372979075 | 0.777 | 0.008 | N | 0.424 | 0.372 | 0.51098835382 | gnomAD-4.0.0 | 2.35436E-05 | None | None | None | None | N | None | 0 | 1.66639E-05 | None | 0 | 4.4607E-04 | None | 0 | 0 | 0 | 1.53714E-04 | 4.79954E-05 |
H/Q | rs1237315602 | 0.253 | 0.983 | N | 0.56 | 0.242 | 0.345632371893 | gnomAD-2.1.1 | 3.98E-06 | None | None | None | None | N | None | 0 | 2.89E-05 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
H/Q | rs1237315602 | 0.253 | 0.983 | N | 0.56 | 0.242 | 0.345632371893 | gnomAD-4.0.0 | 1.59082E-06 | None | None | None | None | N | None | 0 | 2.28666E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
H/R | None | None | 0.949 | N | 0.523 | 0.384 | 0.285698343383 | gnomAD-4.0.0 | 6.84121E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99327E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
H/A | 0.8024 | likely_pathogenic | 0.8093 | pathogenic | -0.43 | Destabilizing | 0.775 | D | 0.574 | neutral | None | None | None | None | N |
H/C | 0.6325 | likely_pathogenic | 0.6407 | pathogenic | 0.295 | Stabilizing | 0.996 | D | 0.739 | prob.delet. | None | None | None | None | N |
H/D | 0.8273 | likely_pathogenic | 0.8404 | pathogenic | -0.366 | Destabilizing | 0.983 | D | 0.613 | neutral | N | 0.50747374 | None | None | N |
H/E | 0.847 | likely_pathogenic | 0.8556 | pathogenic | -0.274 | Destabilizing | 0.875 | D | 0.493 | neutral | None | None | None | None | N |
H/F | 0.55 | ambiguous | 0.5587 | ambiguous | 0.763 | Stabilizing | 0.858 | D | 0.671 | neutral | None | None | None | None | N |
H/G | 0.8562 | likely_pathogenic | 0.8611 | pathogenic | -0.793 | Destabilizing | 0.875 | D | 0.616 | neutral | None | None | None | None | N |
H/I | 0.6814 | likely_pathogenic | 0.698 | pathogenic | 0.559 | Stabilizing | 0.858 | D | 0.645 | neutral | None | None | None | None | N |
H/K | 0.6759 | likely_pathogenic | 0.6881 | pathogenic | -0.257 | Destabilizing | 0.961 | D | 0.603 | neutral | None | None | None | None | N |
H/L | 0.3349 | likely_benign | 0.3441 | ambiguous | 0.559 | Stabilizing | 0.008 | N | 0.424 | neutral | N | 0.464931474 | None | None | N |
H/M | 0.812 | likely_pathogenic | 0.8213 | pathogenic | 0.336 | Stabilizing | 0.923 | D | 0.737 | prob.delet. | None | None | None | None | N |
H/N | 0.3989 | ambiguous | 0.4105 | ambiguous | -0.417 | Destabilizing | 0.941 | D | 0.507 | neutral | N | 0.508722194 | None | None | N |
H/P | 0.8829 | likely_pathogenic | 0.8894 | pathogenic | 0.252 | Stabilizing | 0.983 | D | 0.745 | deleterious | D | 0.569959842 | None | None | N |
H/Q | 0.5847 | likely_pathogenic | 0.5923 | pathogenic | -0.195 | Destabilizing | 0.983 | D | 0.56 | neutral | N | 0.471231394 | None | None | N |
H/R | 0.3536 | ambiguous | 0.3641 | ambiguous | -0.82 | Destabilizing | 0.949 | D | 0.523 | neutral | N | 0.48743314 | None | None | N |
H/S | 0.7174 | likely_pathogenic | 0.726 | pathogenic | -0.388 | Destabilizing | 0.875 | D | 0.569 | neutral | None | None | None | None | N |
H/T | 0.7771 | likely_pathogenic | 0.7887 | pathogenic | -0.186 | Destabilizing | 0.923 | D | 0.641 | neutral | None | None | None | None | N |
H/V | 0.6249 | likely_pathogenic | 0.6428 | pathogenic | 0.252 | Stabilizing | 0.633 | D | 0.612 | neutral | None | None | None | None | N |
H/W | 0.7349 | likely_pathogenic | 0.7499 | pathogenic | 1.023 | Stabilizing | 0.996 | D | 0.747 | deleterious | None | None | None | None | N |
H/Y | 0.2418 | likely_benign | 0.2482 | benign | 1.12 | Stabilizing | 0.84 | D | 0.475 | neutral | N | 0.504722144 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.