Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 2238 | 6937;6938;6939 | chr2:178774999;178774998;178774997 | chr2:179639726;179639725;179639724 |
N2AB | 2238 | 6937;6938;6939 | chr2:178774999;178774998;178774997 | chr2:179639726;179639725;179639724 |
N2A | 2238 | 6937;6938;6939 | chr2:178774999;178774998;178774997 | chr2:179639726;179639725;179639724 |
N2B | 2192 | 6799;6800;6801 | chr2:178774999;178774998;178774997 | chr2:179639726;179639725;179639724 |
Novex-1 | 2192 | 6799;6800;6801 | chr2:178774999;178774998;178774997 | chr2:179639726;179639725;179639724 |
Novex-2 | 2192 | 6799;6800;6801 | chr2:178774999;178774998;178774997 | chr2:179639726;179639725;179639724 |
Novex-3 | 2238 | 6937;6938;6939 | chr2:178774999;178774998;178774997 | chr2:179639726;179639725;179639724 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | rs747377115 | 0.153 | None | N | 0.055 | 0.055 | 0.0138822411134 | gnomAD-2.1.1 | 3.98E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.45E-05 | None | 0 | None | 0 | 0 | 0 |
T/A | rs747377115 | 0.153 | None | N | 0.055 | 0.055 | 0.0138822411134 | gnomAD-4.0.0 | 6.84129E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.52131E-05 | None | 0 | 0 | 0 | 0 | 0 |
T/K | None | None | None | N | 0.141 | 0.078 | 0.0297737177859 | gnomAD-4.0.0 | 6.84146E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.9936E-07 | 0 | 0 |
T/M | rs201284459 | 0.279 | 0.002 | N | 0.094 | 0.077 | None | gnomAD-2.1.1 | 1.62834E-04 | None | None | None | None | N | None | 8.01E-05 | 3.67252E-04 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 2.09387E-04 | 4.1632E-04 |
T/M | rs201284459 | 0.279 | 0.002 | N | 0.094 | 0.077 | None | gnomAD-3.1.2 | 5.26E-05 | None | None | None | None | N | None | 2.41E-05 | 1.96515E-04 | 0 | 0 | 0 | None | 0 | 0 | 5.88E-05 | 0 | 0 |
T/M | rs201284459 | 0.279 | 0.002 | N | 0.094 | 0.077 | None | gnomAD-4.0.0 | 1.17733E-04 | None | None | None | None | N | None | 4.00438E-05 | 3.16772E-04 | None | 0 | 0 | None | 0 | 1.6442E-03 | 1.17804E-04 | 7.68572E-05 | 1.92074E-04 |
T/P | rs747377115 | None | 0.055 | N | 0.305 | 0.034 | 0.0297737177859 | gnomAD-4.0.0 | 1.23143E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.61882E-05 | 0 | 0 |
T/R | rs201284459 | 0.409 | 0.07 | N | 0.338 | 0.064 | 0.0666544352282 | gnomAD-2.1.1 | 2.39E-05 | None | None | None | None | N | None | 0 | 5.79E-05 | None | 0 | 0 | None | 1.30676E-04 | None | 0 | 0 | 0 |
T/R | rs201284459 | 0.409 | 0.07 | N | 0.338 | 0.064 | 0.0666544352282 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 6.55E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
T/R | rs201284459 | 0.409 | 0.07 | N | 0.338 | 0.064 | 0.0666544352282 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
T/R | rs201284459 | 0.409 | 0.07 | N | 0.338 | 0.064 | 0.0666544352282 | gnomAD-4.0.0 | 1.11528E-05 | None | None | None | None | N | None | 0 | 5E-05 | None | 0 | 2.22975E-05 | None | 0 | 0 | 0 | 1.53721E-04 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | 0.0615 | likely_benign | 0.0607 | benign | -0.28 | Destabilizing | None | N | 0.055 | neutral | N | 0.340617602 | None | None | N |
T/C | 0.2824 | likely_benign | 0.2757 | benign | -0.136 | Destabilizing | 0.356 | N | 0.245 | neutral | None | None | None | None | N |
T/D | 0.1749 | likely_benign | 0.1786 | benign | 0.052 | Stabilizing | 0.038 | N | 0.336 | neutral | None | None | None | None | N |
T/E | 0.1369 | likely_benign | 0.1378 | benign | -0.035 | Destabilizing | 0.016 | N | 0.257 | neutral | None | None | None | None | N |
T/F | 0.1126 | likely_benign | 0.1187 | benign | -0.832 | Destabilizing | 0.072 | N | 0.41 | neutral | None | None | None | None | N |
T/G | 0.133 | likely_benign | 0.1316 | benign | -0.392 | Destabilizing | 0.016 | N | 0.229 | neutral | None | None | None | None | N |
T/H | 0.128 | likely_benign | 0.1296 | benign | -0.702 | Destabilizing | 0.356 | N | 0.319 | neutral | None | None | None | None | N |
T/I | 0.0769 | likely_benign | 0.0732 | benign | -0.106 | Destabilizing | 0.016 | N | 0.286 | neutral | None | None | None | None | N |
T/K | 0.0761 | likely_benign | 0.0788 | benign | -0.297 | Destabilizing | None | N | 0.141 | neutral | N | 0.331479027 | None | None | N |
T/L | 0.0504 | likely_benign | 0.0542 | benign | -0.106 | Destabilizing | None | N | 0.095 | neutral | None | None | None | None | N |
T/M | 0.056 | likely_benign | 0.0582 | benign | 0.099 | Stabilizing | 0.002 | N | 0.094 | neutral | N | 0.310616629 | None | None | N |
T/N | 0.0735 | likely_benign | 0.0769 | benign | -0.011 | Destabilizing | 0.038 | N | 0.142 | neutral | None | None | None | None | N |
T/P | 0.0768 | likely_benign | 0.0756 | benign | -0.137 | Destabilizing | 0.055 | N | 0.305 | neutral | N | 0.319270946 | None | None | N |
T/Q | 0.1146 | likely_benign | 0.1175 | benign | -0.27 | Destabilizing | 0.072 | N | 0.319 | neutral | None | None | None | None | N |
T/R | 0.0729 | likely_benign | 0.0775 | benign | -0.011 | Destabilizing | 0.07 | N | 0.338 | neutral | N | 0.340838118 | None | None | N |
T/S | 0.0766 | likely_benign | 0.0776 | benign | -0.197 | Destabilizing | None | N | 0.086 | neutral | N | 0.341722604 | None | None | N |
T/V | 0.0708 | likely_benign | 0.0697 | benign | -0.137 | Destabilizing | None | N | 0.085 | neutral | None | None | None | None | N |
T/W | 0.3534 | ambiguous | 0.3619 | ambiguous | -0.859 | Destabilizing | 0.864 | D | 0.316 | neutral | None | None | None | None | N |
T/Y | 0.1303 | likely_benign | 0.1342 | benign | -0.562 | Destabilizing | 0.356 | N | 0.43 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.