Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 22569 | 67930;67931;67932 | chr2:178579325;178579324;178579323 | chr2:179444052;179444051;179444050 |
N2AB | 20928 | 63007;63008;63009 | chr2:178579325;178579324;178579323 | chr2:179444052;179444051;179444050 |
N2A | 20001 | 60226;60227;60228 | chr2:178579325;178579324;178579323 | chr2:179444052;179444051;179444050 |
N2B | 13504 | 40735;40736;40737 | chr2:178579325;178579324;178579323 | chr2:179444052;179444051;179444050 |
Novex-1 | 13629 | 41110;41111;41112 | chr2:178579325;178579324;178579323 | chr2:179444052;179444051;179444050 |
Novex-2 | 13696 | 41311;41312;41313 | chr2:178579325;178579324;178579323 | chr2:179444052;179444051;179444050 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/Q | rs185620750 | -0.035 | 0.997 | N | 0.597 | 0.274 | None | gnomAD-2.1.1 | 1.62599E-04 | None | None | None | None | I | None | 6.47E-05 | 9.62324E-04 | None | 0 | 1.68388E-04 | None | 6.61E-05 | None | 0 | 0 | 1.6728E-04 |
R/Q | rs185620750 | -0.035 | 0.997 | N | 0.597 | 0.274 | None | gnomAD-3.1.2 | 2.82876E-04 | None | None | None | None | I | None | 2.41E-05 | 2.62261E-03 | 0 | 0 | 3.87597E-04 | None | 0 | 0 | 0 | 0 | 0 |
R/Q | rs185620750 | -0.035 | 0.997 | N | 0.597 | 0.274 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | I | None | 0 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
R/Q | rs185620750 | -0.035 | 0.997 | N | 0.597 | 0.274 | None | gnomAD-4.0.0 | 7.40089E-05 | None | None | None | None | I | None | 2.67401E-05 | 1.28849E-03 | None | 0 | 2.46316E-04 | None | 0 | 0 | 2.20982E-05 | 2.20361E-05 | 1.60705E-05 |
R/W | rs746313264 | -0.317 | 1.0 | N | 0.683 | 0.411 | None | gnomAD-2.1.1 | 3.97E-05 | None | None | None | None | I | None | 2.48488E-04 | 0 | None | 0 | 2.06825E-04 | None | 0 | None | 0 | 7.86E-06 | 0 |
R/W | rs746313264 | -0.317 | 1.0 | N | 0.683 | 0.411 | None | gnomAD-3.1.2 | 5.26E-05 | None | None | None | None | I | None | 1.20668E-04 | 6.56E-05 | 0 | 0 | 1.93798E-04 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/W | rs746313264 | -0.317 | 1.0 | N | 0.683 | 0.411 | None | gnomAD-4.0.0 | 3.04839E-05 | None | None | None | None | I | None | 2.14242E-04 | 1.67471E-05 | None | 0 | 6.71862E-05 | None | 0 | 0 | 2.21002E-05 | 2.20371E-05 | 1.60777E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.6338 | likely_pathogenic | 0.5402 | ambiguous | -0.237 | Destabilizing | 0.953 | D | 0.537 | neutral | None | None | None | None | I |
R/C | 0.1937 | likely_benign | 0.165 | benign | -0.267 | Destabilizing | 0.999 | D | 0.689 | prob.neutral | None | None | None | None | I |
R/D | 0.8626 | likely_pathogenic | 0.7964 | pathogenic | 0.045 | Stabilizing | 0.986 | D | 0.621 | neutral | None | None | None | None | I |
R/E | 0.5817 | likely_pathogenic | 0.495 | ambiguous | 0.166 | Stabilizing | 0.953 | D | 0.532 | neutral | None | None | None | None | I |
R/F | 0.6744 | likely_pathogenic | 0.582 | pathogenic | -0.113 | Destabilizing | 0.993 | D | 0.696 | prob.neutral | None | None | None | None | I |
R/G | 0.5902 | likely_pathogenic | 0.5122 | ambiguous | -0.532 | Destabilizing | 0.975 | D | 0.546 | neutral | N | 0.488622168 | None | None | I |
R/H | 0.1045 | likely_benign | 0.0931 | benign | -1.001 | Destabilizing | 0.128 | N | 0.424 | neutral | None | None | None | None | I |
R/I | 0.3639 | ambiguous | 0.2999 | benign | 0.536 | Stabilizing | 0.993 | D | 0.698 | prob.neutral | None | None | None | None | I |
R/K | 0.1769 | likely_benign | 0.1564 | benign | -0.283 | Destabilizing | 0.893 | D | 0.53 | neutral | None | None | None | None | I |
R/L | 0.3447 | ambiguous | 0.2884 | benign | 0.536 | Stabilizing | 0.993 | D | 0.551 | neutral | N | 0.495918868 | None | None | I |
R/M | 0.4629 | ambiguous | 0.411 | ambiguous | 0.011 | Stabilizing | 0.999 | D | 0.655 | neutral | None | None | None | None | I |
R/N | 0.7402 | likely_pathogenic | 0.6489 | pathogenic | 0.05 | Stabilizing | 0.953 | D | 0.565 | neutral | None | None | None | None | I |
R/P | 0.8943 | likely_pathogenic | 0.8329 | pathogenic | 0.301 | Stabilizing | 0.999 | D | 0.681 | prob.neutral | N | 0.488622168 | None | None | I |
R/Q | 0.1393 | likely_benign | 0.1237 | benign | -0.011 | Destabilizing | 0.997 | D | 0.597 | neutral | N | 0.498575171 | None | None | I |
R/S | 0.6269 | likely_pathogenic | 0.5417 | ambiguous | -0.47 | Destabilizing | 0.953 | D | 0.566 | neutral | None | None | None | None | I |
R/T | 0.3651 | ambiguous | 0.3051 | benign | -0.173 | Destabilizing | 0.993 | D | 0.587 | neutral | None | None | None | None | I |
R/V | 0.4508 | ambiguous | 0.3776 | ambiguous | 0.301 | Stabilizing | 0.993 | D | 0.693 | prob.neutral | None | None | None | None | I |
R/W | 0.2412 | likely_benign | 0.2109 | benign | 0.039 | Stabilizing | 1.0 | D | 0.683 | prob.neutral | N | 0.477519352 | None | None | I |
R/Y | 0.4623 | ambiguous | 0.387 | ambiguous | 0.38 | Stabilizing | 0.986 | D | 0.683 | prob.neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.