Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 22751 | 68476;68477;68478 | chr2:178578689;178578688;178578687 | chr2:179443416;179443415;179443414 |
N2AB | 21110 | 63553;63554;63555 | chr2:178578689;178578688;178578687 | chr2:179443416;179443415;179443414 |
N2A | 20183 | 60772;60773;60774 | chr2:178578689;178578688;178578687 | chr2:179443416;179443415;179443414 |
N2B | 13686 | 41281;41282;41283 | chr2:178578689;178578688;178578687 | chr2:179443416;179443415;179443414 |
Novex-1 | 13811 | 41656;41657;41658 | chr2:178578689;178578688;178578687 | chr2:179443416;179443415;179443414 |
Novex-2 | 13878 | 41857;41858;41859 | chr2:178578689;178578688;178578687 | chr2:179443416;179443415;179443414 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/S | rs761226149 | -0.288 | None | N | 0.109 | 0.102 | 0.146414634003 | gnomAD-2.1.1 | 1.22E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 2.68E-05 | 0 |
N/S | rs761226149 | -0.288 | None | N | 0.109 | 0.102 | 0.146414634003 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | I | None | 0 | 6.56E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
N/S | rs761226149 | -0.288 | None | N | 0.109 | 0.102 | 0.146414634003 | gnomAD-4.0.0 | 9.92853E-06 | None | None | None | None | I | None | 1.33743E-05 | 1.67347E-05 | None | 0 | 0 | None | 0 | 0 | 1.1026E-05 | 0 | 1.60375E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/A | 0.1059 | likely_benign | 0.0878 | benign | -0.556 | Destabilizing | 0.015 | N | 0.297 | neutral | None | None | None | None | I |
N/C | 0.1379 | likely_benign | 0.114 | benign | 0.167 | Stabilizing | 0.816 | D | 0.457 | neutral | None | None | None | None | I |
N/D | 0.1123 | likely_benign | 0.1006 | benign | 0.145 | Stabilizing | None | N | 0.092 | neutral | N | 0.454064751 | None | None | I |
N/E | 0.172 | likely_benign | 0.1477 | benign | 0.185 | Stabilizing | None | N | 0.081 | neutral | None | None | None | None | I |
N/F | 0.2882 | likely_benign | 0.2413 | benign | -0.535 | Destabilizing | 0.54 | D | 0.563 | neutral | None | None | None | None | I |
N/G | 0.1857 | likely_benign | 0.1573 | benign | -0.831 | Destabilizing | 0.015 | N | 0.217 | neutral | None | None | None | None | I |
N/H | 0.0656 | likely_benign | 0.0593 | benign | -0.673 | Destabilizing | 0.47 | N | 0.361 | neutral | N | 0.453024601 | None | None | I |
N/I | 0.0928 | likely_benign | 0.0812 | benign | 0.108 | Stabilizing | 0.059 | N | 0.479 | neutral | N | 0.447138778 | None | None | I |
N/K | 0.1169 | likely_benign | 0.0981 | benign | -0.065 | Destabilizing | None | N | 0.079 | neutral | N | 0.37756405 | None | None | I |
N/L | 0.115 | likely_benign | 0.0993 | benign | 0.108 | Stabilizing | 0.033 | N | 0.371 | neutral | None | None | None | None | I |
N/M | 0.1681 | likely_benign | 0.145 | benign | 0.35 | Stabilizing | 0.54 | D | 0.477 | neutral | None | None | None | None | I |
N/P | 0.718 | likely_pathogenic | 0.684 | pathogenic | -0.084 | Destabilizing | 0.251 | N | 0.514 | neutral | None | None | None | None | I |
N/Q | 0.1303 | likely_benign | 0.1079 | benign | -0.524 | Destabilizing | 0.006 | N | 0.13 | neutral | None | None | None | None | I |
N/R | 0.1303 | likely_benign | 0.1173 | benign | -0.106 | Destabilizing | 0.033 | N | 0.263 | neutral | None | None | None | None | I |
N/S | 0.0647 | likely_benign | 0.0606 | benign | -0.503 | Destabilizing | None | N | 0.109 | neutral | N | 0.417351802 | None | None | I |
N/T | 0.0726 | likely_benign | 0.0629 | benign | -0.284 | Destabilizing | 0.025 | N | 0.252 | neutral | N | 0.394264299 | None | None | I |
N/V | 0.0844 | likely_benign | 0.0743 | benign | -0.084 | Destabilizing | 0.001 | N | 0.322 | neutral | None | None | None | None | I |
N/W | 0.5466 | ambiguous | 0.4877 | ambiguous | -0.384 | Destabilizing | 0.931 | D | 0.483 | neutral | None | None | None | None | I |
N/Y | 0.0981 | likely_benign | 0.0899 | benign | -0.163 | Destabilizing | 0.73 | D | 0.586 | neutral | N | 0.471458433 | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.