Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 23059 | 69400;69401;69402 | chr2:178577160;178577159;178577158 | chr2:179441887;179441886;179441885 |
N2AB | 21418 | 64477;64478;64479 | chr2:178577160;178577159;178577158 | chr2:179441887;179441886;179441885 |
N2A | 20491 | 61696;61697;61698 | chr2:178577160;178577159;178577158 | chr2:179441887;179441886;179441885 |
N2B | 13994 | 42205;42206;42207 | chr2:178577160;178577159;178577158 | chr2:179441887;179441886;179441885 |
Novex-1 | 14119 | 42580;42581;42582 | chr2:178577160;178577159;178577158 | chr2:179441887;179441886;179441885 |
Novex-2 | 14186 | 42781;42782;42783 | chr2:178577160;178577159;178577158 | chr2:179441887;179441886;179441885 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs1394979272 | -1.598 | 0.988 | D | 0.675 | 0.408 | 0.62500370566 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 6.46E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
L/F | rs1394979272 | -1.598 | 0.988 | D | 0.675 | 0.408 | 0.62500370566 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
L/F | rs1394979272 | -1.598 | 0.988 | D | 0.675 | 0.408 | 0.62500370566 | gnomAD-4.0.0 | 2.56464E-06 | None | None | None | None | N | None | 1.69314E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 2.39498E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.8803 | likely_pathogenic | 0.8929 | pathogenic | -2.612 | Highly Destabilizing | 0.968 | D | 0.678 | prob.neutral | None | None | None | None | N |
L/C | 0.7932 | likely_pathogenic | 0.8075 | pathogenic | -1.942 | Destabilizing | 1.0 | D | 0.784 | deleterious | None | None | None | None | N |
L/D | 0.9997 | likely_pathogenic | 0.9997 | pathogenic | -3.337 | Highly Destabilizing | 0.998 | D | 0.893 | deleterious | None | None | None | None | N |
L/E | 0.9976 | likely_pathogenic | 0.9979 | pathogenic | -3.023 | Highly Destabilizing | 0.998 | D | 0.871 | deleterious | None | None | None | None | N |
L/F | 0.4952 | ambiguous | 0.4752 | ambiguous | -1.556 | Destabilizing | 0.988 | D | 0.675 | prob.neutral | D | 0.526252478 | None | None | N |
L/G | 0.989 | likely_pathogenic | 0.9907 | pathogenic | -3.231 | Highly Destabilizing | 0.995 | D | 0.861 | deleterious | None | None | None | None | N |
L/H | 0.9917 | likely_pathogenic | 0.9926 | pathogenic | -2.988 | Highly Destabilizing | 0.999 | D | 0.878 | deleterious | D | 0.570160444 | None | None | N |
L/I | 0.0844 | likely_benign | 0.0816 | benign | -0.769 | Destabilizing | 0.142 | N | 0.322 | neutral | N | 0.475263714 | None | None | N |
L/K | 0.9963 | likely_pathogenic | 0.9968 | pathogenic | -2.023 | Highly Destabilizing | 0.995 | D | 0.831 | deleterious | None | None | None | None | N |
L/M | 0.2556 | likely_benign | 0.2576 | benign | -0.938 | Destabilizing | 0.991 | D | 0.655 | neutral | None | None | None | None | N |
L/N | 0.9977 | likely_pathogenic | 0.9978 | pathogenic | -2.672 | Highly Destabilizing | 0.998 | D | 0.897 | deleterious | None | None | None | None | N |
L/P | 0.9971 | likely_pathogenic | 0.9975 | pathogenic | -1.371 | Destabilizing | 0.998 | D | 0.893 | deleterious | D | 0.570160444 | None | None | N |
L/Q | 0.9881 | likely_pathogenic | 0.9899 | pathogenic | -2.344 | Highly Destabilizing | 1.0 | D | 0.889 | deleterious | None | None | None | None | N |
L/R | 0.9907 | likely_pathogenic | 0.9921 | pathogenic | -2.039 | Highly Destabilizing | 0.998 | D | 0.87 | deleterious | D | 0.570160444 | None | None | N |
L/S | 0.9912 | likely_pathogenic | 0.992 | pathogenic | -3.277 | Highly Destabilizing | 0.995 | D | 0.834 | deleterious | None | None | None | None | N |
L/T | 0.9526 | likely_pathogenic | 0.9579 | pathogenic | -2.796 | Highly Destabilizing | 0.991 | D | 0.676 | prob.neutral | None | None | None | None | N |
L/V | 0.0833 | likely_benign | 0.0811 | benign | -1.371 | Destabilizing | 0.618 | D | 0.597 | neutral | N | 0.520676532 | None | None | N |
L/W | 0.9696 | likely_pathogenic | 0.9693 | pathogenic | -2.049 | Highly Destabilizing | 1.0 | D | 0.837 | deleterious | None | None | None | None | N |
L/Y | 0.9677 | likely_pathogenic | 0.9678 | pathogenic | -1.753 | Destabilizing | 0.995 | D | 0.765 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.