Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 23350 | 70273;70274;70275 | chr2:178576084;178576083;178576082 | chr2:179440811;179440810;179440809 |
N2AB | 21709 | 65350;65351;65352 | chr2:178576084;178576083;178576082 | chr2:179440811;179440810;179440809 |
N2A | 20782 | 62569;62570;62571 | chr2:178576084;178576083;178576082 | chr2:179440811;179440810;179440809 |
N2B | 14285 | 43078;43079;43080 | chr2:178576084;178576083;178576082 | chr2:179440811;179440810;179440809 |
Novex-1 | 14410 | 43453;43454;43455 | chr2:178576084;178576083;178576082 | chr2:179440811;179440810;179440809 |
Novex-2 | 14477 | 43654;43655;43656 | chr2:178576084;178576083;178576082 | chr2:179440811;179440810;179440809 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs1390481050 | -1.201 | 0.988 | N | 0.754 | 0.315 | 0.623733534801 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
L/F | rs1390481050 | -1.201 | 0.988 | N | 0.754 | 0.315 | 0.623733534801 | gnomAD-4.0.0 | 2.05299E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 3.47866E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.9211 | likely_pathogenic | 0.908 | pathogenic | -2.17 | Highly Destabilizing | 0.968 | D | 0.637 | neutral | None | None | None | None | I |
L/C | 0.9389 | likely_pathogenic | 0.9186 | pathogenic | -1.551 | Destabilizing | 1.0 | D | 0.747 | deleterious | None | None | None | None | I |
L/D | 0.9932 | likely_pathogenic | 0.9912 | pathogenic | -1.606 | Destabilizing | 0.998 | D | 0.765 | deleterious | None | None | None | None | I |
L/E | 0.9711 | likely_pathogenic | 0.9647 | pathogenic | -1.5 | Destabilizing | 0.995 | D | 0.753 | deleterious | None | None | None | None | I |
L/F | 0.677 | likely_pathogenic | 0.6496 | pathogenic | -1.323 | Destabilizing | 0.988 | D | 0.754 | deleterious | N | 0.504640792 | None | None | I |
L/G | 0.9624 | likely_pathogenic | 0.9569 | pathogenic | -2.617 | Highly Destabilizing | 0.995 | D | 0.743 | deleterious | None | None | None | None | I |
L/H | 0.9377 | likely_pathogenic | 0.9216 | pathogenic | -1.868 | Destabilizing | 0.999 | D | 0.755 | deleterious | N | 0.518813874 | None | None | I |
L/I | 0.5284 | ambiguous | 0.47 | ambiguous | -0.953 | Destabilizing | 0.919 | D | 0.569 | neutral | D | 0.527957582 | None | None | I |
L/K | 0.9458 | likely_pathogenic | 0.9395 | pathogenic | -1.644 | Destabilizing | 0.991 | D | 0.715 | prob.delet. | None | None | None | None | I |
L/M | 0.311 | likely_benign | 0.2946 | benign | -0.856 | Destabilizing | 0.862 | D | 0.51 | neutral | None | None | None | None | I |
L/N | 0.948 | likely_pathogenic | 0.9387 | pathogenic | -1.607 | Destabilizing | 0.995 | D | 0.767 | deleterious | None | None | None | None | I |
L/P | 0.9913 | likely_pathogenic | 0.9909 | pathogenic | -1.331 | Destabilizing | 0.998 | D | 0.767 | deleterious | N | 0.518813874 | None | None | I |
L/Q | 0.8879 | likely_pathogenic | 0.8599 | pathogenic | -1.635 | Destabilizing | 0.995 | D | 0.745 | deleterious | None | None | None | None | I |
L/R | 0.9295 | likely_pathogenic | 0.918 | pathogenic | -1.188 | Destabilizing | 0.994 | D | 0.737 | prob.delet. | N | 0.518560385 | None | None | I |
L/S | 0.9641 | likely_pathogenic | 0.9574 | pathogenic | -2.359 | Highly Destabilizing | 0.991 | D | 0.711 | prob.delet. | None | None | None | None | I |
L/T | 0.915 | likely_pathogenic | 0.8935 | pathogenic | -2.116 | Highly Destabilizing | 0.991 | D | 0.735 | prob.delet. | None | None | None | None | I |
L/V | 0.5881 | likely_pathogenic | 0.5168 | ambiguous | -1.331 | Destabilizing | 0.919 | D | 0.569 | neutral | N | 0.483171115 | None | None | I |
L/W | 0.8586 | likely_pathogenic | 0.8382 | pathogenic | -1.486 | Destabilizing | 1.0 | D | 0.73 | prob.delet. | None | None | None | None | I |
L/Y | 0.8664 | likely_pathogenic | 0.8439 | pathogenic | -1.261 | Destabilizing | 0.995 | D | 0.776 | deleterious | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.