Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 23425 | 70498;70499;70500 | chr2:178575859;178575858;178575857 | chr2:179440586;179440585;179440584 |
N2AB | 21784 | 65575;65576;65577 | chr2:178575859;178575858;178575857 | chr2:179440586;179440585;179440584 |
N2A | 20857 | 62794;62795;62796 | chr2:178575859;178575858;178575857 | chr2:179440586;179440585;179440584 |
N2B | 14360 | 43303;43304;43305 | chr2:178575859;178575858;178575857 | chr2:179440586;179440585;179440584 |
Novex-1 | 14485 | 43678;43679;43680 | chr2:178575859;178575858;178575857 | chr2:179440586;179440585;179440584 |
Novex-2 | 14552 | 43879;43880;43881 | chr2:178575859;178575858;178575857 | chr2:179440586;179440585;179440584 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
S/C | rs566232507 | -0.115 | 0.994 | N | 0.414 | 0.423 | 0.498001352042 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 2.9E-05 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
S/C | rs566232507 | -0.115 | 0.994 | N | 0.414 | 0.423 | 0.498001352042 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 6.55E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
S/C | rs566232507 | -0.115 | 0.994 | N | 0.414 | 0.423 | 0.498001352042 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
S/C | rs566232507 | -0.115 | 0.994 | N | 0.414 | 0.423 | 0.498001352042 | gnomAD-4.0.0 | 3.84388E-06 | None | None | None | None | N | None | 0 | 5.08251E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
S/I | rs980974415 | None | 0.884 | N | 0.432 | 0.442 | 0.642832020782 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
S/I | rs980974415 | None | 0.884 | N | 0.432 | 0.442 | 0.642832020782 | gnomAD-4.0.0 | 6.57523E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.47067E-05 | 0 | 0 |
S/N | None | None | 0.684 | N | 0.384 | 0.151 | 0.208000267992 | gnomAD-4.0.0 | 1.59167E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.85933E-06 | 0 | 0 |
S/T | rs980974415 | None | 0.001 | N | 0.128 | 0.068 | 0.137902524267 | gnomAD-4.0.0 | 1.11417E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.7156E-05 | 0 | 3.0248E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
S/A | 0.0985 | likely_benign | 0.1056 | benign | -0.286 | Destabilizing | 0.016 | N | 0.144 | neutral | None | None | None | None | N |
S/C | 0.1548 | likely_benign | 0.1637 | benign | -0.243 | Destabilizing | 0.994 | D | 0.414 | neutral | N | 0.489001374 | None | None | N |
S/D | 0.5136 | ambiguous | 0.5585 | ambiguous | 0.157 | Stabilizing | 0.742 | D | 0.33 | neutral | None | None | None | None | N |
S/E | 0.474 | ambiguous | 0.5226 | ambiguous | 0.082 | Stabilizing | 0.742 | D | 0.317 | neutral | None | None | None | None | N |
S/F | 0.316 | likely_benign | 0.3284 | benign | -0.759 | Destabilizing | 0.953 | D | 0.468 | neutral | None | None | None | None | N |
S/G | 0.1768 | likely_benign | 0.1799 | benign | -0.434 | Destabilizing | 0.472 | N | 0.353 | neutral | N | 0.49959721 | None | None | N |
S/H | 0.4328 | ambiguous | 0.4558 | ambiguous | -0.891 | Destabilizing | 0.996 | D | 0.414 | neutral | None | None | None | None | N |
S/I | 0.2459 | likely_benign | 0.267 | benign | -0.028 | Destabilizing | 0.884 | D | 0.432 | neutral | N | 0.511371589 | None | None | N |
S/K | 0.7377 | likely_pathogenic | 0.7857 | pathogenic | -0.526 | Destabilizing | 0.742 | D | 0.313 | neutral | None | None | None | None | N |
S/L | 0.1459 | likely_benign | 0.1551 | benign | -0.028 | Destabilizing | 0.59 | D | 0.395 | neutral | None | None | None | None | N |
S/M | 0.1722 | likely_benign | 0.1819 | benign | 0.085 | Stabilizing | 0.984 | D | 0.419 | neutral | None | None | None | None | N |
S/N | 0.1785 | likely_benign | 0.1851 | benign | -0.241 | Destabilizing | 0.684 | D | 0.384 | neutral | N | 0.521381113 | None | None | N |
S/P | 0.8572 | likely_pathogenic | 0.8531 | pathogenic | -0.083 | Destabilizing | 0.953 | D | 0.423 | neutral | None | None | None | None | N |
S/Q | 0.4906 | ambiguous | 0.5211 | ambiguous | -0.44 | Destabilizing | 0.953 | D | 0.41 | neutral | None | None | None | None | N |
S/R | 0.7162 | likely_pathogenic | 0.7612 | pathogenic | -0.326 | Destabilizing | 0.884 | D | 0.439 | neutral | N | 0.513396348 | None | None | N |
S/T | 0.0654 | likely_benign | 0.0669 | benign | -0.316 | Destabilizing | 0.001 | N | 0.128 | neutral | N | 0.448688722 | None | None | N |
S/V | 0.2107 | likely_benign | 0.2344 | benign | -0.083 | Destabilizing | 0.59 | D | 0.391 | neutral | None | None | None | None | N |
S/W | 0.5387 | ambiguous | 0.5462 | ambiguous | -0.8 | Destabilizing | 0.996 | D | 0.537 | neutral | None | None | None | None | N |
S/Y | 0.2914 | likely_benign | 0.2962 | benign | -0.515 | Destabilizing | 0.984 | D | 0.463 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.