Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 23453 | 70582;70583;70584 | chr2:178575775;178575774;178575773 | chr2:179440502;179440501;179440500 |
N2AB | 21812 | 65659;65660;65661 | chr2:178575775;178575774;178575773 | chr2:179440502;179440501;179440500 |
N2A | 20885 | 62878;62879;62880 | chr2:178575775;178575774;178575773 | chr2:179440502;179440501;179440500 |
N2B | 14388 | 43387;43388;43389 | chr2:178575775;178575774;178575773 | chr2:179440502;179440501;179440500 |
Novex-1 | 14513 | 43762;43763;43764 | chr2:178575775;178575774;178575773 | chr2:179440502;179440501;179440500 |
Novex-2 | 14580 | 43963;43964;43965 | chr2:178575775;178575774;178575773 | chr2:179440502;179440501;179440500 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/I | rs1435352674 | 0.074 | 0.012 | N | 0.385 | 0.176 | 0.255777322467 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.58E-05 | None | 0 | None | 0 | 0 | 0 |
T/I | rs1435352674 | 0.074 | 0.012 | N | 0.385 | 0.176 | 0.255777322467 | gnomAD-4.0.0 | 1.59201E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.77654E-05 | None | 0 | 0 | 0 | 0 | 0 |
T/N | None | None | 0.947 | N | 0.616 | 0.34 | 0.321393169273 | gnomAD-4.0.0 | 3.18402E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 5.72037E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | 0.1311 | likely_benign | 0.1409 | benign | -0.75 | Destabilizing | 0.212 | N | 0.502 | neutral | N | 0.475460616 | None | None | N |
T/C | 0.3627 | ambiguous | 0.4019 | ambiguous | -0.802 | Destabilizing | 0.997 | D | 0.688 | prob.neutral | None | None | None | None | N |
T/D | 0.6754 | likely_pathogenic | 0.7324 | pathogenic | -1.795 | Destabilizing | 0.886 | D | 0.65 | neutral | None | None | None | None | N |
T/E | 0.5451 | ambiguous | 0.6209 | pathogenic | -1.68 | Destabilizing | 0.963 | D | 0.643 | neutral | None | None | None | None | N |
T/F | 0.2111 | likely_benign | 0.2407 | benign | -0.575 | Destabilizing | 0.98 | D | 0.705 | prob.neutral | None | None | None | None | N |
T/G | 0.4352 | ambiguous | 0.4654 | ambiguous | -1.096 | Destabilizing | 0.985 | D | 0.651 | neutral | None | None | None | None | N |
T/H | 0.3109 | likely_benign | 0.3395 | benign | -1.449 | Destabilizing | 0.998 | D | 0.72 | prob.delet. | None | None | None | None | N |
T/I | 0.1235 | likely_benign | 0.1263 | benign | 0.115 | Stabilizing | 0.012 | N | 0.385 | neutral | N | 0.518001586 | None | None | N |
T/K | 0.394 | ambiguous | 0.4678 | ambiguous | -0.849 | Destabilizing | 0.973 | D | 0.646 | neutral | None | None | None | None | N |
T/L | 0.0967 | likely_benign | 0.0989 | benign | 0.115 | Stabilizing | 0.266 | N | 0.478 | neutral | None | None | None | None | N |
T/M | 0.0802 | likely_benign | 0.0801 | benign | 0.233 | Stabilizing | 0.985 | D | 0.689 | prob.neutral | None | None | None | None | N |
T/N | 0.1874 | likely_benign | 0.207 | benign | -1.372 | Destabilizing | 0.947 | D | 0.616 | neutral | N | 0.475055769 | None | None | N |
T/P | 0.7578 | likely_pathogenic | 0.8003 | pathogenic | -0.141 | Destabilizing | 0.947 | D | 0.67 | neutral | N | 0.519519939 | None | None | N |
T/Q | 0.3318 | likely_benign | 0.3617 | ambiguous | -1.338 | Destabilizing | 0.981 | D | 0.705 | prob.neutral | None | None | None | None | N |
T/R | 0.3344 | likely_benign | 0.4129 | ambiguous | -0.849 | Destabilizing | 0.99 | D | 0.698 | prob.neutral | None | None | None | None | N |
T/S | 0.1426 | likely_benign | 0.1563 | benign | -1.409 | Destabilizing | 0.352 | N | 0.506 | neutral | N | 0.46741805 | None | None | N |
T/V | 0.1076 | likely_benign | 0.108 | benign | -0.141 | Destabilizing | 0.206 | N | 0.47 | neutral | None | None | None | None | N |
T/W | 0.5948 | likely_pathogenic | 0.6224 | pathogenic | -0.776 | Destabilizing | 0.999 | D | 0.699 | prob.neutral | None | None | None | None | N |
T/Y | 0.2776 | likely_benign | 0.3037 | benign | -0.399 | Destabilizing | 0.99 | D | 0.733 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.