Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 23611 | 71056;71057;71058 | chr2:178575301;178575300;178575299 | chr2:179440028;179440027;179440026 |
N2AB | 21970 | 66133;66134;66135 | chr2:178575301;178575300;178575299 | chr2:179440028;179440027;179440026 |
N2A | 21043 | 63352;63353;63354 | chr2:178575301;178575300;178575299 | chr2:179440028;179440027;179440026 |
N2B | 14546 | 43861;43862;43863 | chr2:178575301;178575300;178575299 | chr2:179440028;179440027;179440026 |
Novex-1 | 14671 | 44236;44237;44238 | chr2:178575301;178575300;178575299 | chr2:179440028;179440027;179440026 |
Novex-2 | 14738 | 44437;44438;44439 | chr2:178575301;178575300;178575299 | chr2:179440028;179440027;179440026 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/E | rs72646891 | -0.395 | 0.922 | N | 0.49 | 0.297 | 0.439018943094 | gnomAD-4.0.0 | 6.84362E-07 | None | None | None | None | I | None | 0 | 0 | None | 0 | 2.52972E-05 | None | 0 | 0 | 0 | 0 | 0 |
A/T | rs373765469 | -0.202 | 0.929 | N | 0.393 | 0.163 | None | gnomAD-2.1.1 | 5.64E-05 | None | None | None | None | I | None | 6.46E-05 | 2.9E-05 | None | 4.98405E-04 | 0 | None | 3.27E-05 | None | 0 | 5.34E-05 | 0 |
A/T | rs373765469 | -0.202 | 0.929 | N | 0.393 | 0.163 | None | gnomAD-3.1.2 | 3.94E-05 | None | None | None | None | I | None | 7.24E-05 | 0 | 0 | 2.88018E-04 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
A/T | rs373765469 | -0.202 | 0.929 | N | 0.393 | 0.163 | None | gnomAD-4.0.0 | 4.15287E-05 | None | None | None | None | I | None | 4.00449E-05 | 1.66761E-05 | None | 4.0546E-04 | 0 | None | 0 | 0 | 3.89949E-05 | 2.19573E-05 | 4.80492E-05 |
A/V | rs72646891 | -0.086 | 0.649 | N | 0.409 | 0.217 | None | gnomAD-2.1.1 | 9.83717E-04 | None | None | None | None | I | None | 1.04597E-02 | 3.68209E-04 | None | 0 | 0 | None | 9.81E-05 | None | 0 | 3.91E-05 | 1.40726E-04 |
A/V | rs72646891 | -0.086 | 0.649 | N | 0.409 | 0.217 | None | gnomAD-3.1.2 | 2.97964E-03 | None | None | None | None | I | None | 1.05304E-02 | 7.20461E-04 | 0 | 0 | 1.93723E-04 | None | 0 | 0 | 4.41E-05 | 2.07039E-04 | 4.79386E-04 |
A/V | rs72646891 | -0.086 | 0.649 | N | 0.409 | 0.217 | None | 1000 genomes | 4.19329E-03 | None | None | None | None | I | None | 1.51E-02 | 0 | None | None | 0 | 1E-03 | None | None | None | 0 | None |
A/V | rs72646891 | -0.086 | 0.649 | N | 0.409 | 0.217 | None | gnomAD-4.0.0 | 5.78914E-04 | None | None | None | None | I | None | 1.0495E-02 | 5.50073E-04 | None | 0 | 6.71441E-05 | None | 0 | 1.65125E-04 | 5.25593E-05 | 6.5879E-05 | 6.72473E-04 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/C | 0.3649 | ambiguous | 0.3977 | ambiguous | -0.858 | Destabilizing | 0.998 | D | 0.433 | neutral | None | None | None | None | I |
A/D | 0.6945 | likely_pathogenic | 0.7533 | pathogenic | -0.413 | Destabilizing | 0.956 | D | 0.59 | neutral | None | None | None | None | I |
A/E | 0.5314 | ambiguous | 0.6006 | pathogenic | -0.563 | Destabilizing | 0.922 | D | 0.49 | neutral | N | 0.501549267 | None | None | I |
A/F | 0.3091 | likely_benign | 0.363 | ambiguous | -0.89 | Destabilizing | 0.956 | D | 0.661 | neutral | None | None | None | None | I |
A/G | 0.2257 | likely_benign | 0.2368 | benign | -0.212 | Destabilizing | 0.922 | D | 0.399 | neutral | N | 0.493295143 | None | None | I |
A/H | 0.5472 | ambiguous | 0.5926 | pathogenic | -0.175 | Destabilizing | 0.998 | D | 0.667 | neutral | None | None | None | None | I |
A/I | 0.231 | likely_benign | 0.2818 | benign | -0.412 | Destabilizing | 0.043 | N | 0.341 | neutral | None | None | None | None | I |
A/K | 0.6189 | likely_pathogenic | 0.6924 | pathogenic | -0.423 | Destabilizing | 0.86 | D | 0.485 | neutral | None | None | None | None | I |
A/L | 0.2168 | likely_benign | 0.2543 | benign | -0.412 | Destabilizing | 0.303 | N | 0.474 | neutral | None | None | None | None | I |
A/M | 0.2262 | likely_benign | 0.2648 | benign | -0.507 | Destabilizing | 0.956 | D | 0.523 | neutral | None | None | None | None | I |
A/N | 0.4388 | ambiguous | 0.4725 | ambiguous | -0.207 | Destabilizing | 0.956 | D | 0.606 | neutral | None | None | None | None | I |
A/P | 0.8767 | likely_pathogenic | 0.9022 | pathogenic | -0.322 | Destabilizing | 0.988 | D | 0.519 | neutral | N | 0.508960101 | None | None | I |
A/Q | 0.46 | ambiguous | 0.4999 | ambiguous | -0.467 | Destabilizing | 0.978 | D | 0.517 | neutral | None | None | None | None | I |
A/R | 0.5207 | ambiguous | 0.5861 | pathogenic | -0.006 | Destabilizing | 0.978 | D | 0.522 | neutral | None | None | None | None | I |
A/S | 0.1102 | likely_benign | 0.1159 | benign | -0.403 | Destabilizing | 0.161 | N | 0.183 | neutral | N | 0.479597914 | None | None | I |
A/T | 0.1028 | likely_benign | 0.1228 | benign | -0.478 | Destabilizing | 0.929 | D | 0.393 | neutral | N | 0.470091791 | None | None | I |
A/V | 0.1088 | likely_benign | 0.1276 | benign | -0.322 | Destabilizing | 0.649 | D | 0.409 | neutral | N | 0.442290319 | None | None | I |
A/W | 0.7784 | likely_pathogenic | 0.8285 | pathogenic | -0.975 | Destabilizing | 0.998 | D | 0.74 | deleterious | None | None | None | None | I |
A/Y | 0.527 | ambiguous | 0.5859 | pathogenic | -0.657 | Destabilizing | 0.978 | D | 0.665 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.