Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 23790 | 71593;71594;71595 | chr2:178574764;178574763;178574762 | chr2:179439491;179439490;179439489 |
N2AB | 22149 | 66670;66671;66672 | chr2:178574764;178574763;178574762 | chr2:179439491;179439490;179439489 |
N2A | 21222 | 63889;63890;63891 | chr2:178574764;178574763;178574762 | chr2:179439491;179439490;179439489 |
N2B | 14725 | 44398;44399;44400 | chr2:178574764;178574763;178574762 | chr2:179439491;179439490;179439489 |
Novex-1 | 14850 | 44773;44774;44775 | chr2:178574764;178574763;178574762 | chr2:179439491;179439490;179439489 |
Novex-2 | 14917 | 44974;44975;44976 | chr2:178574764;178574763;178574762 | chr2:179439491;179439490;179439489 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs775743818 | -0.187 | 1.0 | N | 0.639 | 0.413 | 0.6544015285 | gnomAD-2.1.1 | 3.23E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 1.03252E-04 | None | 0 | None | 4.02E-05 | 4.72E-05 | 0 |
R/C | rs775743818 | -0.187 | 1.0 | N | 0.639 | 0.413 | 0.6544015285 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/C | rs775743818 | -0.187 | 1.0 | N | 0.639 | 0.413 | 0.6544015285 | gnomAD-4.0.0 | 3.41152E-05 | None | None | None | None | I | None | 1.33576E-05 | 0 | None | 0 | 4.47067E-05 | None | 0 | 0 | 4.3257E-05 | 0 | 1.60313E-05 |
R/G | None | None | 0.922 | N | 0.486 | 0.333 | 0.418718287753 | gnomAD-4.0.0 | 6.8487E-07 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 9.00093E-07 | 0 | 0 |
R/H | rs55677134 | -0.511 | 0.159 | N | 0.363 | 0.083 | None | gnomAD-2.1.1 | 1.21492E-03 | None | None | None | None | I | None | 0 | 1.13733E-04 | None | 0 | 1.65119E-02 | None | 1.97811E-04 | None | 0 | 3.15E-05 | 5.67054E-04 |
R/H | rs55677134 | -0.511 | 0.159 | N | 0.363 | 0.083 | None | gnomAD-3.1.2 | 7.03827E-04 | None | None | None | None | I | None | 0 | 6.56E-05 | 0 | 0 | 2.00078E-02 | None | 0 | 0 | 2.94E-05 | 2.07469E-04 | 0 |
R/H | rs55677134 | -0.511 | 0.159 | N | 0.363 | 0.083 | None | 1000 genomes | 5.79073E-03 | None | None | None | None | I | None | 0 | 0 | None | None | 2.88E-02 | 0 | None | None | None | 0 | None |
R/H | rs55677134 | -0.511 | 0.159 | N | 0.363 | 0.083 | None | gnomAD-4.0.0 | 7.80964E-04 | None | None | None | None | I | None | 0 | 8.35031E-05 | None | 0 | 2.63581E-02 | None | 0 | 0 | 2.12066E-05 | 2.09187E-04 | 4.96779E-04 |
R/P | None | None | 0.988 | N | 0.563 | 0.298 | 0.288352970974 | gnomAD-4.0.0 | 6.84947E-07 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 1.65859E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.6384 | likely_pathogenic | 0.5692 | pathogenic | 0.019 | Stabilizing | 0.86 | D | 0.51 | neutral | None | None | None | None | I |
R/C | 0.2371 | likely_benign | 0.1986 | benign | -0.225 | Destabilizing | 1.0 | D | 0.639 | neutral | N | 0.487556801 | None | None | I |
R/D | 0.7937 | likely_pathogenic | 0.741 | pathogenic | -0.278 | Destabilizing | 0.956 | D | 0.523 | neutral | None | None | None | None | I |
R/E | 0.6553 | likely_pathogenic | 0.6033 | pathogenic | -0.238 | Destabilizing | 0.754 | D | 0.521 | neutral | None | None | None | None | I |
R/F | 0.7502 | likely_pathogenic | 0.694 | pathogenic | -0.289 | Destabilizing | 0.956 | D | 0.618 | neutral | None | None | None | None | I |
R/G | 0.3767 | ambiguous | 0.2778 | benign | -0.125 | Destabilizing | 0.922 | D | 0.486 | neutral | N | 0.411822978 | None | None | I |
R/H | 0.1136 | likely_benign | 0.1056 | benign | -0.587 | Destabilizing | 0.159 | N | 0.363 | neutral | N | 0.501583765 | None | None | I |
R/I | 0.6815 | likely_pathogenic | 0.6507 | pathogenic | 0.352 | Stabilizing | 0.978 | D | 0.615 | neutral | None | None | None | None | I |
R/K | 0.1463 | likely_benign | 0.1312 | benign | -0.144 | Destabilizing | 0.717 | D | 0.483 | neutral | None | None | None | None | I |
R/L | 0.4812 | ambiguous | 0.4384 | ambiguous | 0.352 | Stabilizing | 0.976 | D | 0.476 | neutral | N | 0.469199056 | None | None | I |
R/M | 0.5874 | likely_pathogenic | 0.5348 | ambiguous | -0.054 | Destabilizing | 0.998 | D | 0.523 | neutral | None | None | None | None | I |
R/N | 0.6295 | likely_pathogenic | 0.5389 | ambiguous | -0.024 | Destabilizing | 0.754 | D | 0.529 | neutral | None | None | None | None | I |
R/P | 0.8664 | likely_pathogenic | 0.8298 | pathogenic | 0.259 | Stabilizing | 0.988 | D | 0.563 | neutral | N | 0.501757123 | None | None | I |
R/Q | 0.1699 | likely_benign | 0.1456 | benign | -0.085 | Destabilizing | 0.956 | D | 0.569 | neutral | None | None | None | None | I |
R/S | 0.6635 | likely_pathogenic | 0.5931 | pathogenic | -0.238 | Destabilizing | 0.922 | D | 0.521 | neutral | N | 0.474050447 | None | None | I |
R/T | 0.5774 | likely_pathogenic | 0.5282 | ambiguous | -0.089 | Destabilizing | 0.978 | D | 0.509 | neutral | None | None | None | None | I |
R/V | 0.6989 | likely_pathogenic | 0.673 | pathogenic | 0.259 | Stabilizing | 0.978 | D | 0.603 | neutral | None | None | None | None | I |
R/W | 0.3543 | ambiguous | 0.3309 | benign | -0.449 | Destabilizing | 0.998 | D | 0.658 | neutral | None | None | None | None | I |
R/Y | 0.5033 | ambiguous | 0.4541 | ambiguous | -0.044 | Destabilizing | 0.915 | D | 0.567 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.