Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 24087 | 72484;72485;72486 | chr2:178573873;178573872;178573871 | chr2:179438600;179438599;179438598 |
N2AB | 22446 | 67561;67562;67563 | chr2:178573873;178573872;178573871 | chr2:179438600;179438599;179438598 |
N2A | 21519 | 64780;64781;64782 | chr2:178573873;178573872;178573871 | chr2:179438600;179438599;179438598 |
N2B | 15022 | 45289;45290;45291 | chr2:178573873;178573872;178573871 | chr2:179438600;179438599;179438598 |
Novex-1 | 15147 | 45664;45665;45666 | chr2:178573873;178573872;178573871 | chr2:179438600;179438599;179438598 |
Novex-2 | 15214 | 45865;45866;45867 | chr2:178573873;178573872;178573871 | chr2:179438600;179438599;179438598 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/P | rs1371976311 | -1.715 | 0.997 | D | 0.888 | 0.861 | 0.90969009521 | gnomAD-2.1.1 | 8.06E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 1.12082E-04 | None | 0 | None | 0 | 0 | 0 |
L/P | rs1371976311 | -1.715 | 0.997 | D | 0.888 | 0.861 | 0.90969009521 | gnomAD-4.0.0 | 2.74285E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 7.59071E-05 | None | 0 | 0 | 0 | 0 | 1.66085E-05 |
L/V | None | None | 0.17 | N | 0.407 | 0.427 | 0.503124787307 | gnomAD-4.0.0 | 1.59748E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.87318E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.7465 | likely_pathogenic | 0.7633 | pathogenic | -2.454 | Highly Destabilizing | 0.953 | D | 0.705 | prob.neutral | None | None | None | None | N |
L/C | 0.823 | likely_pathogenic | 0.8179 | pathogenic | -1.714 | Destabilizing | 0.999 | D | 0.758 | deleterious | None | None | None | None | N |
L/D | 0.9988 | likely_pathogenic | 0.9986 | pathogenic | -3.152 | Highly Destabilizing | 0.998 | D | 0.888 | deleterious | None | None | None | None | N |
L/E | 0.9909 | likely_pathogenic | 0.9898 | pathogenic | -2.848 | Highly Destabilizing | 0.998 | D | 0.884 | deleterious | None | None | None | None | N |
L/F | 0.4469 | ambiguous | 0.4602 | ambiguous | -1.499 | Destabilizing | 0.986 | D | 0.711 | prob.delet. | None | None | None | None | N |
L/G | 0.9766 | likely_pathogenic | 0.9768 | pathogenic | -2.999 | Highly Destabilizing | 0.998 | D | 0.882 | deleterious | None | None | None | None | N |
L/H | 0.9714 | likely_pathogenic | 0.9717 | pathogenic | -2.862 | Highly Destabilizing | 0.999 | D | 0.861 | deleterious | None | None | None | None | N |
L/I | 0.1061 | likely_benign | 0.1038 | benign | -0.792 | Destabilizing | 0.06 | N | 0.409 | neutral | None | None | None | None | N |
L/K | 0.9843 | likely_pathogenic | 0.9817 | pathogenic | -1.868 | Destabilizing | 0.993 | D | 0.862 | deleterious | None | None | None | None | N |
L/M | 0.2297 | likely_benign | 0.2319 | benign | -1.143 | Destabilizing | 0.982 | D | 0.693 | prob.neutral | D | 0.530270128 | None | None | N |
L/N | 0.9931 | likely_pathogenic | 0.9925 | pathogenic | -2.621 | Highly Destabilizing | 0.998 | D | 0.887 | deleterious | None | None | None | None | N |
L/P | 0.9938 | likely_pathogenic | 0.9927 | pathogenic | -1.342 | Destabilizing | 0.997 | D | 0.888 | deleterious | D | 0.567999576 | None | None | N |
L/Q | 0.9652 | likely_pathogenic | 0.9611 | pathogenic | -2.217 | Highly Destabilizing | 0.997 | D | 0.873 | deleterious | D | 0.567999576 | None | None | N |
L/R | 0.9627 | likely_pathogenic | 0.9598 | pathogenic | -2.134 | Highly Destabilizing | 0.997 | D | 0.873 | deleterious | D | 0.579520465 | None | None | N |
L/S | 0.9755 | likely_pathogenic | 0.977 | pathogenic | -3.013 | Highly Destabilizing | 0.993 | D | 0.863 | deleterious | None | None | None | None | N |
L/T | 0.8739 | likely_pathogenic | 0.8741 | pathogenic | -2.553 | Highly Destabilizing | 0.986 | D | 0.777 | deleterious | None | None | None | None | N |
L/V | 0.1229 | likely_benign | 0.1258 | benign | -1.342 | Destabilizing | 0.17 | N | 0.407 | neutral | N | 0.516191571 | None | None | N |
L/W | 0.9142 | likely_pathogenic | 0.9212 | pathogenic | -1.797 | Destabilizing | 0.999 | D | 0.82 | deleterious | None | None | None | None | N |
L/Y | 0.9062 | likely_pathogenic | 0.9117 | pathogenic | -1.686 | Destabilizing | 0.998 | D | 0.769 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.