Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 24262 | 73009;73010;73011 | chr2:178573348;178573347;178573346 | chr2:179438075;179438074;179438073 |
N2AB | 22621 | 68086;68087;68088 | chr2:178573348;178573347;178573346 | chr2:179438075;179438074;179438073 |
N2A | 21694 | 65305;65306;65307 | chr2:178573348;178573347;178573346 | chr2:179438075;179438074;179438073 |
N2B | 15197 | 45814;45815;45816 | chr2:178573348;178573347;178573346 | chr2:179438075;179438074;179438073 |
Novex-1 | 15322 | 46189;46190;46191 | chr2:178573348;178573347;178573346 | chr2:179438075;179438074;179438073 |
Novex-2 | 15389 | 46390;46391;46392 | chr2:178573348;178573347;178573346 | chr2:179438075;179438074;179438073 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs576976296 | -1.584 | 1.0 | N | 0.759 | 0.401 | 0.613436686781 | gnomAD-2.1.1 | 1.82E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 6.13E-05 | None | 0 | 2.84E-05 | 0 |
R/C | rs576976296 | -1.584 | 1.0 | N | 0.759 | 0.401 | 0.613436686781 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 2.07727E-04 | 0 |
R/C | rs576976296 | -1.584 | 1.0 | N | 0.759 | 0.401 | 0.613436686781 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 1E-03 | None |
R/C | rs576976296 | -1.584 | 1.0 | N | 0.759 | 0.401 | 0.613436686781 | gnomAD-4.0.0 | 4.5562E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 5.25303E-06 | 1.29992E-05 | 0 |
R/H | rs372390659 | -2.116 | 0.385 | N | 0.263 | 0.264 | None | gnomAD-2.1.1 | 4.09E-05 | None | None | None | None | N | None | 4.26E-05 | 0 | None | 0 | 0 | None | 1.84049E-04 | None | 0 | 4.74E-05 | 0 |
R/H | rs372390659 | -2.116 | 0.385 | N | 0.263 | 0.264 | None | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 2.07297E-04 | 0 |
R/H | rs372390659 | -2.116 | 0.385 | N | 0.263 | 0.264 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 1E-03 | None |
R/H | rs372390659 | -2.116 | 0.385 | N | 0.263 | 0.264 | None | gnomAD-4.0.0 | 2.7327E-05 | None | None | None | None | N | None | 1.37756E-05 | 0 | None | 0 | 0 | None | 0 | 1.75747E-04 | 2.71316E-05 | 1.03839E-04 | 1.69045E-05 |
R/S | None | None | 0.975 | N | 0.597 | 0.346 | 0.350088858571 | gnomAD-4.0.0 | 7.2233E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 9.30868E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.9613 | likely_pathogenic | 0.9046 | pathogenic | -2.022 | Highly Destabilizing | 0.953 | D | 0.517 | neutral | None | None | None | None | N |
R/C | 0.4297 | ambiguous | 0.2803 | benign | -1.822 | Destabilizing | 1.0 | D | 0.759 | deleterious | N | 0.48585587 | None | None | N |
R/D | 0.9954 | likely_pathogenic | 0.9847 | pathogenic | -0.842 | Destabilizing | 0.986 | D | 0.687 | prob.neutral | None | None | None | None | N |
R/E | 0.9475 | likely_pathogenic | 0.8736 | pathogenic | -0.619 | Destabilizing | 0.953 | D | 0.444 | neutral | None | None | None | None | N |
R/F | 0.9408 | likely_pathogenic | 0.8461 | pathogenic | -1.219 | Destabilizing | 0.993 | D | 0.797 | deleterious | None | None | None | None | N |
R/G | 0.9361 | likely_pathogenic | 0.835 | pathogenic | -2.386 | Highly Destabilizing | 0.975 | D | 0.625 | neutral | N | 0.52181089 | None | None | N |
R/H | 0.2335 | likely_benign | 0.1441 | benign | -2.067 | Highly Destabilizing | 0.385 | N | 0.263 | neutral | N | 0.507176129 | None | None | N |
R/I | 0.9048 | likely_pathogenic | 0.7937 | pathogenic | -0.964 | Destabilizing | 0.993 | D | 0.803 | deleterious | None | None | None | None | N |
R/K | 0.2053 | likely_benign | 0.1645 | benign | -1.213 | Destabilizing | 0.893 | D | 0.477 | neutral | None | None | None | None | N |
R/L | 0.7807 | likely_pathogenic | 0.6205 | pathogenic | -0.964 | Destabilizing | 0.993 | D | 0.647 | neutral | N | 0.501629493 | None | None | N |
R/M | 0.8559 | likely_pathogenic | 0.7366 | pathogenic | -1.4 | Destabilizing | 0.999 | D | 0.659 | neutral | None | None | None | None | N |
R/N | 0.9716 | likely_pathogenic | 0.9282 | pathogenic | -1.233 | Destabilizing | 0.953 | D | 0.483 | neutral | None | None | None | None | N |
R/P | 0.9985 | likely_pathogenic | 0.9954 | pathogenic | -1.306 | Destabilizing | 0.999 | D | 0.754 | deleterious | D | 0.54477699 | None | None | N |
R/Q | 0.3024 | likely_benign | 0.1993 | benign | -1.156 | Destabilizing | 0.986 | D | 0.528 | neutral | None | None | None | None | N |
R/S | 0.9778 | likely_pathogenic | 0.9387 | pathogenic | -2.215 | Highly Destabilizing | 0.975 | D | 0.597 | neutral | N | 0.489966792 | None | None | N |
R/T | 0.9528 | likely_pathogenic | 0.8851 | pathogenic | -1.769 | Destabilizing | 0.993 | D | 0.649 | neutral | None | None | None | None | N |
R/V | 0.9329 | likely_pathogenic | 0.8523 | pathogenic | -1.306 | Destabilizing | 0.993 | D | 0.786 | deleterious | None | None | None | None | N |
R/W | 0.6158 | likely_pathogenic | 0.3924 | ambiguous | -0.653 | Destabilizing | 0.999 | D | 0.725 | prob.delet. | None | None | None | None | N |
R/Y | 0.8377 | likely_pathogenic | 0.6626 | pathogenic | -0.544 | Destabilizing | 0.973 | D | 0.751 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.