Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 24535 | 73828;73829;73830 | chr2:178572529;178572528;178572527 | chr2:179437256;179437255;179437254 |
N2AB | 22894 | 68905;68906;68907 | chr2:178572529;178572528;178572527 | chr2:179437256;179437255;179437254 |
N2A | 21967 | 66124;66125;66126 | chr2:178572529;178572528;178572527 | chr2:179437256;179437255;179437254 |
N2B | 15470 | 46633;46634;46635 | chr2:178572529;178572528;178572527 | chr2:179437256;179437255;179437254 |
Novex-1 | 15595 | 47008;47009;47010 | chr2:178572529;178572528;178572527 | chr2:179437256;179437255;179437254 |
Novex-2 | 15662 | 47209;47210;47211 | chr2:178572529;178572528;178572527 | chr2:179437256;179437255;179437254 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
S/C | None | None | 1.0 | N | 0.756 | 0.474 | 0.678686674281 | gnomAD-4.0.0 | 6.84357E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 1.65695E-05 |
S/F | rs201804005 | None | 1.0 | N | 0.8 | 0.468 | 0.829790380963 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
S/F | rs201804005 | None | 1.0 | N | 0.8 | 0.468 | 0.829790380963 | gnomAD-4.0.0 | 6.57428E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.47046E-05 | 0 | 0 |
S/P | None | None | 0.997 | D | 0.761 | 0.532 | 0.488477830397 | gnomAD-4.0.0 | 1.36869E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.79918E-06 | 0 | 0 |
S/Y | rs201804005 | -0.966 | 1.0 | N | 0.797 | 0.482 | None | gnomAD-2.1.1 | 4.43256E-04 | None | None | None | None | N | None | 0 | 8.49E-05 | None | 7.54936E-03 | 0 | None | 1.63463E-04 | None | 3.19949E-04 | 2.19099E-04 | 2.81215E-04 |
S/Y | rs201804005 | -0.966 | 1.0 | N | 0.797 | 0.482 | None | gnomAD-3.1.2 | 3.81308E-04 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 1.06567E-02 | 0 | None | 3.76506E-04 | 0 | 2.20569E-04 | 0 | 4.78011E-04 |
S/Y | rs201804005 | -0.966 | 1.0 | N | 0.797 | 0.482 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 1E-03 | None | None | None | 0 | None |
S/Y | rs201804005 | -0.966 | 1.0 | N | 0.797 | 0.482 | None | gnomAD-4.0.0 | 3.2291E-04 | None | None | None | None | N | None | 1.33305E-05 | 5.001E-05 | None | 8.41557E-03 | 0 | None | 4.53083E-04 | 1.65235E-04 | 1.56831E-04 | 1.20799E-04 | 6.72366E-04 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
S/A | 0.0873 | likely_benign | 0.0802 | benign | -0.612 | Destabilizing | 0.64 | D | 0.431 | neutral | N | 0.497370895 | None | None | N |
S/C | 0.108 | likely_benign | 0.1145 | benign | -0.889 | Destabilizing | 1.0 | D | 0.756 | deleterious | N | 0.498246722 | None | None | N |
S/D | 0.7757 | likely_pathogenic | 0.7124 | pathogenic | -1.607 | Destabilizing | 0.984 | D | 0.507 | neutral | None | None | None | None | N |
S/E | 0.7918 | likely_pathogenic | 0.7504 | pathogenic | -1.55 | Destabilizing | 0.988 | D | 0.505 | neutral | None | None | None | None | N |
S/F | 0.2359 | likely_benign | 0.2186 | benign | -0.836 | Destabilizing | 1.0 | D | 0.8 | deleterious | N | 0.510172458 | None | None | N |
S/G | 0.1427 | likely_benign | 0.1383 | benign | -0.871 | Destabilizing | 0.991 | D | 0.435 | neutral | None | None | None | None | N |
S/H | 0.4797 | ambiguous | 0.4496 | ambiguous | -1.363 | Destabilizing | 1.0 | D | 0.761 | deleterious | None | None | None | None | N |
S/I | 0.3893 | ambiguous | 0.3662 | ambiguous | -0.02 | Destabilizing | 1.0 | D | 0.797 | deleterious | None | None | None | None | N |
S/K | 0.9186 | likely_pathogenic | 0.8913 | pathogenic | -0.7 | Destabilizing | 1.0 | D | 0.503 | neutral | None | None | None | None | N |
S/L | 0.183 | likely_benign | 0.168 | benign | -0.02 | Destabilizing | 0.999 | D | 0.672 | neutral | None | None | None | None | N |
S/M | 0.2018 | likely_benign | 0.2006 | benign | 0.118 | Stabilizing | 1.0 | D | 0.763 | deleterious | None | None | None | None | N |
S/N | 0.3168 | likely_benign | 0.2899 | benign | -1.076 | Destabilizing | 0.875 | D | 0.513 | neutral | None | None | None | None | N |
S/P | 0.9956 | likely_pathogenic | 0.9926 | pathogenic | -0.184 | Destabilizing | 0.997 | D | 0.761 | deleterious | D | 0.557737274 | None | None | N |
S/Q | 0.6904 | likely_pathogenic | 0.6558 | pathogenic | -1.231 | Destabilizing | 0.999 | D | 0.652 | neutral | None | None | None | None | N |
S/R | 0.8911 | likely_pathogenic | 0.8582 | pathogenic | -0.618 | Destabilizing | 1.0 | D | 0.782 | deleterious | None | None | None | None | N |
S/T | 0.1056 | likely_benign | 0.0974 | benign | -0.845 | Destabilizing | 0.003 | N | 0.357 | neutral | N | 0.515561501 | None | None | N |
S/V | 0.3145 | likely_benign | 0.2953 | benign | -0.184 | Destabilizing | 0.999 | D | 0.724 | prob.delet. | None | None | None | None | N |
S/W | 0.5197 | ambiguous | 0.4715 | ambiguous | -0.955 | Destabilizing | 1.0 | D | 0.771 | deleterious | None | None | None | None | N |
S/Y | 0.2749 | likely_benign | 0.2476 | benign | -0.568 | Destabilizing | 1.0 | D | 0.797 | deleterious | N | 0.490560493 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.