Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 25092 | 75499;75500;75501 | chr2:178570858;178570857;178570856 | chr2:179435585;179435584;179435583 |
N2AB | 23451 | 70576;70577;70578 | chr2:178570858;178570857;178570856 | chr2:179435585;179435584;179435583 |
N2A | 22524 | 67795;67796;67797 | chr2:178570858;178570857;178570856 | chr2:179435585;179435584;179435583 |
N2B | 16027 | 48304;48305;48306 | chr2:178570858;178570857;178570856 | chr2:179435585;179435584;179435583 |
Novex-1 | 16152 | 48679;48680;48681 | chr2:178570858;178570857;178570856 | chr2:179435585;179435584;179435583 |
Novex-2 | 16219 | 48880;48881;48882 | chr2:178570858;178570857;178570856 | chr2:179435585;179435584;179435583 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
E/K | rs397517700 | 0.332 | 0.016 | N | 0.162 | 0.159 | None | gnomAD-2.1.1 | 1.79E-05 | None | None | None | None | N | None | 1.65317E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 1.4041E-04 |
E/K | rs397517700 | 0.332 | 0.016 | N | 0.162 | 0.159 | None | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 9.65E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
E/K | rs397517700 | 0.332 | 0.016 | N | 0.162 | 0.159 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
E/K | rs397517700 | 0.332 | 0.016 | N | 0.162 | 0.159 | None | gnomAD-4.0.0 | 6.81722E-06 | None | None | None | None | N | None | 1.19987E-04 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 3.20184E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
E/A | 0.099 | likely_benign | 0.1049 | benign | -0.453 | Destabilizing | 0.334 | N | 0.483 | neutral | N | 0.518153515 | None | None | N |
E/C | 0.6971 | likely_pathogenic | 0.7158 | pathogenic | -0.125 | Destabilizing | 0.992 | D | 0.554 | neutral | None | None | None | None | N |
E/D | 0.1088 | likely_benign | 0.1131 | benign | -0.38 | Destabilizing | 0.004 | N | 0.148 | neutral | N | 0.471170431 | None | None | N |
E/F | 0.5601 | ambiguous | 0.5845 | pathogenic | -0.24 | Destabilizing | 0.92 | D | 0.543 | neutral | None | None | None | None | N |
E/G | 0.1278 | likely_benign | 0.1383 | benign | -0.663 | Destabilizing | 0.549 | D | 0.564 | neutral | N | 0.492586912 | None | None | N |
E/H | 0.3367 | likely_benign | 0.3422 | ambiguous | 0.023 | Stabilizing | 0.92 | D | 0.557 | neutral | None | None | None | None | N |
E/I | 0.1995 | likely_benign | 0.2125 | benign | 0.07 | Stabilizing | 0.739 | D | 0.595 | neutral | None | None | None | None | N |
E/K | 0.0849 | likely_benign | 0.089 | benign | 0.263 | Stabilizing | 0.016 | N | 0.162 | neutral | N | 0.498663677 | None | None | N |
E/L | 0.1907 | likely_benign | 0.2013 | benign | 0.07 | Stabilizing | 0.447 | N | 0.577 | neutral | None | None | None | None | N |
E/M | 0.2655 | likely_benign | 0.2826 | benign | 0.162 | Stabilizing | 0.92 | D | 0.551 | neutral | None | None | None | None | N |
E/N | 0.1718 | likely_benign | 0.1802 | benign | -0.131 | Destabilizing | 0.447 | N | 0.567 | neutral | None | None | None | None | N |
E/P | 0.2579 | likely_benign | 0.2656 | benign | -0.084 | Destabilizing | 0.92 | D | 0.607 | neutral | None | None | None | None | N |
E/Q | 0.099 | likely_benign | 0.1019 | benign | -0.078 | Destabilizing | 0.016 | N | 0.119 | neutral | N | 0.467836839 | None | None | N |
E/R | 0.1614 | likely_benign | 0.1648 | benign | 0.513 | Stabilizing | 0.447 | N | 0.565 | neutral | None | None | None | None | N |
E/S | 0.1386 | likely_benign | 0.145 | benign | -0.288 | Destabilizing | 0.617 | D | 0.46 | neutral | None | None | None | None | N |
E/T | 0.1633 | likely_benign | 0.1736 | benign | -0.111 | Destabilizing | 0.617 | D | 0.547 | neutral | None | None | None | None | N |
E/V | 0.1229 | likely_benign | 0.1303 | benign | -0.084 | Destabilizing | 0.016 | N | 0.384 | neutral | N | 0.509496746 | None | None | N |
E/W | 0.8295 | likely_pathogenic | 0.8381 | pathogenic | -0.05 | Destabilizing | 0.992 | D | 0.611 | neutral | None | None | None | None | N |
E/Y | 0.4423 | ambiguous | 0.4544 | ambiguous | 0.012 | Stabilizing | 0.972 | D | 0.549 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.