Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 25175 | 75748;75749;75750 | chr2:178570609;178570608;178570607 | chr2:179435336;179435335;179435334 |
N2AB | 23534 | 70825;70826;70827 | chr2:178570609;178570608;178570607 | chr2:179435336;179435335;179435334 |
N2A | 22607 | 68044;68045;68046 | chr2:178570609;178570608;178570607 | chr2:179435336;179435335;179435334 |
N2B | 16110 | 48553;48554;48555 | chr2:178570609;178570608;178570607 | chr2:179435336;179435335;179435334 |
Novex-1 | 16235 | 48928;48929;48930 | chr2:178570609;178570608;178570607 | chr2:179435336;179435335;179435334 |
Novex-2 | 16302 | 49129;49130;49131 | chr2:178570609;178570608;178570607 | chr2:179435336;179435335;179435334 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | rs1231900798 | None | None | N | 0.135 | 0.074 | 0.243972157842 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
V/A | rs1231900798 | None | None | N | 0.135 | 0.074 | 0.243972157842 | gnomAD-4.0.0 | 6.5767E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.47102E-05 | 0 | 0 |
V/I | rs537603113 | -0.282 | None | N | 0.125 | 0.113 | 0.124217242631 | gnomAD-2.1.1 | 8.05E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 6.54E-05 | None | 0 | 0 | 0 |
V/I | rs537603113 | -0.282 | None | N | 0.125 | 0.113 | 0.124217242631 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 2.07211E-04 | 0 |
V/I | rs537603113 | -0.282 | None | N | 0.125 | 0.113 | 0.124217242631 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 1E-03 | None |
V/I | rs537603113 | -0.282 | None | N | 0.125 | 0.113 | 0.124217242631 | gnomAD-4.0.0 | 8.0573E-06 | None | None | None | None | N | None | 1.33344E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.31767E-04 | 0 |
V/L | rs537603113 | -0.395 | 0.002 | N | 0.212 | 0.071 | 0.107399877778 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.9E-06 | 0 |
V/L | rs537603113 | -0.395 | 0.002 | N | 0.212 | 0.071 | 0.107399877778 | gnomAD-4.0.0 | 2.053E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.69869E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.1643 | likely_benign | 0.16 | benign | -0.91 | Destabilizing | None | N | 0.135 | neutral | N | 0.475701965 | None | None | N |
V/C | 0.5426 | ambiguous | 0.5948 | pathogenic | -0.766 | Destabilizing | 0.356 | N | 0.455 | neutral | None | None | None | None | N |
V/D | 0.3608 | ambiguous | 0.3654 | ambiguous | -0.591 | Destabilizing | 0.072 | N | 0.5 | neutral | None | None | None | None | N |
V/E | 0.3184 | likely_benign | 0.3146 | benign | -0.684 | Destabilizing | 0.055 | N | 0.515 | neutral | N | 0.444877625 | None | None | N |
V/F | 0.153 | likely_benign | 0.1585 | benign | -1.02 | Destabilizing | None | N | 0.167 | neutral | None | None | None | None | N |
V/G | 0.2001 | likely_benign | 0.2013 | benign | -1.097 | Destabilizing | None | N | 0.184 | neutral | D | 0.532595397 | None | None | N |
V/H | 0.4909 | ambiguous | 0.5024 | ambiguous | -0.63 | Destabilizing | 0.628 | D | 0.474 | neutral | None | None | None | None | N |
V/I | 0.0649 | likely_benign | 0.0693 | benign | -0.549 | Destabilizing | None | N | 0.125 | neutral | N | 0.441533463 | None | None | N |
V/K | 0.3126 | likely_benign | 0.3002 | benign | -0.673 | Destabilizing | 0.072 | N | 0.519 | neutral | None | None | None | None | N |
V/L | 0.1166 | likely_benign | 0.1269 | benign | -0.549 | Destabilizing | 0.002 | N | 0.212 | neutral | N | 0.499002899 | None | None | N |
V/M | 0.1113 | likely_benign | 0.1145 | benign | -0.372 | Destabilizing | 0.214 | N | 0.359 | neutral | None | None | None | None | N |
V/N | 0.2025 | likely_benign | 0.2058 | benign | -0.424 | Destabilizing | 0.214 | N | 0.527 | neutral | None | None | None | None | N |
V/P | 0.7423 | likely_pathogenic | 0.7737 | pathogenic | -0.633 | Destabilizing | 0.356 | N | 0.533 | neutral | None | None | None | None | N |
V/Q | 0.279 | likely_benign | 0.2728 | benign | -0.702 | Destabilizing | 0.356 | N | 0.493 | neutral | None | None | None | None | N |
V/R | 0.2728 | likely_benign | 0.2712 | benign | -0.113 | Destabilizing | 0.214 | N | 0.525 | neutral | None | None | None | None | N |
V/S | 0.1543 | likely_benign | 0.1532 | benign | -0.87 | Destabilizing | 0.016 | N | 0.424 | neutral | None | None | None | None | N |
V/T | 0.1505 | likely_benign | 0.1447 | benign | -0.863 | Destabilizing | 0.001 | N | 0.135 | neutral | None | None | None | None | N |
V/W | 0.7409 | likely_pathogenic | 0.7734 | pathogenic | -1.085 | Destabilizing | 0.864 | D | 0.473 | neutral | None | None | None | None | N |
V/Y | 0.4683 | ambiguous | 0.4892 | ambiguous | -0.786 | Destabilizing | 0.038 | N | 0.53 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.