Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 25250 | 75973;75974;75975 | chr2:178570384;178570383;178570382 | chr2:179435111;179435110;179435109 |
N2AB | 23609 | 71050;71051;71052 | chr2:178570384;178570383;178570382 | chr2:179435111;179435110;179435109 |
N2A | 22682 | 68269;68270;68271 | chr2:178570384;178570383;178570382 | chr2:179435111;179435110;179435109 |
N2B | 16185 | 48778;48779;48780 | chr2:178570384;178570383;178570382 | chr2:179435111;179435110;179435109 |
Novex-1 | 16310 | 49153;49154;49155 | chr2:178570384;178570383;178570382 | chr2:179435111;179435110;179435109 |
Novex-2 | 16377 | 49354;49355;49356 | chr2:178570384;178570383;178570382 | chr2:179435111;179435110;179435109 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs1231715116 | -0.54 | 0.988 | N | 0.652 | 0.298 | 0.437958778045 | gnomAD-2.1.1 | 4.05E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
L/F | rs1231715116 | -0.54 | 0.988 | N | 0.652 | 0.298 | 0.437958778045 | gnomAD-4.0.0 | 1.59251E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.43299E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.7438 | likely_pathogenic | 0.7422 | pathogenic | -0.472 | Destabilizing | 0.968 | D | 0.6 | neutral | None | None | None | None | I |
L/C | 0.9235 | likely_pathogenic | 0.9281 | pathogenic | -0.81 | Destabilizing | 1.0 | D | 0.681 | prob.neutral | None | None | None | None | I |
L/D | 0.9712 | likely_pathogenic | 0.9736 | pathogenic | -0.183 | Destabilizing | 0.998 | D | 0.729 | prob.delet. | None | None | None | None | I |
L/E | 0.9021 | likely_pathogenic | 0.9064 | pathogenic | -0.264 | Destabilizing | 0.995 | D | 0.711 | prob.delet. | None | None | None | None | I |
L/F | 0.6754 | likely_pathogenic | 0.6543 | pathogenic | -0.573 | Destabilizing | 0.988 | D | 0.652 | neutral | N | 0.485941094 | None | None | I |
L/G | 0.9116 | likely_pathogenic | 0.9145 | pathogenic | -0.58 | Destabilizing | 0.995 | D | 0.703 | prob.neutral | None | None | None | None | I |
L/H | 0.8283 | likely_pathogenic | 0.8354 | pathogenic | 0.124 | Stabilizing | 1.0 | D | 0.74 | deleterious | None | None | None | None | I |
L/I | 0.2252 | likely_benign | 0.2125 | benign | -0.3 | Destabilizing | 0.919 | D | 0.507 | neutral | N | 0.499394396 | None | None | I |
L/K | 0.7797 | likely_pathogenic | 0.7924 | pathogenic | -0.346 | Destabilizing | 0.991 | D | 0.654 | neutral | None | None | None | None | I |
L/M | 0.2828 | likely_benign | 0.2802 | benign | -0.638 | Destabilizing | 0.862 | D | 0.513 | neutral | None | None | None | None | I |
L/N | 0.8698 | likely_pathogenic | 0.8819 | pathogenic | -0.245 | Destabilizing | 0.995 | D | 0.727 | prob.delet. | None | None | None | None | I |
L/P | 0.7792 | likely_pathogenic | 0.795 | pathogenic | -0.33 | Destabilizing | 0.998 | D | 0.727 | prob.delet. | None | None | None | None | I |
L/Q | 0.7218 | likely_pathogenic | 0.7414 | pathogenic | -0.401 | Destabilizing | 0.995 | D | 0.687 | prob.neutral | None | None | None | None | I |
L/R | 0.6997 | likely_pathogenic | 0.7068 | pathogenic | 0.105 | Stabilizing | 0.995 | D | 0.679 | prob.neutral | None | None | None | None | I |
L/S | 0.8899 | likely_pathogenic | 0.8936 | pathogenic | -0.641 | Destabilizing | 0.988 | D | 0.655 | neutral | N | 0.473399873 | None | None | I |
L/T | 0.7613 | likely_pathogenic | 0.7721 | pathogenic | -0.62 | Destabilizing | 0.991 | D | 0.635 | neutral | None | None | None | None | I |
L/V | 0.2912 | likely_benign | 0.2759 | benign | -0.33 | Destabilizing | 0.919 | D | 0.549 | neutral | N | 0.470322282 | None | None | I |
L/W | 0.7822 | likely_pathogenic | 0.7637 | pathogenic | -0.592 | Destabilizing | 1.0 | D | 0.727 | prob.delet. | None | None | None | None | I |
L/Y | 0.8572 | likely_pathogenic | 0.8559 | pathogenic | -0.365 | Destabilizing | 0.995 | D | 0.681 | prob.neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.