Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 25295 | 76108;76109;76110 | chr2:178570249;178570248;178570247 | chr2:179434976;179434975;179434974 |
N2AB | 23654 | 71185;71186;71187 | chr2:178570249;178570248;178570247 | chr2:179434976;179434975;179434974 |
N2A | 22727 | 68404;68405;68406 | chr2:178570249;178570248;178570247 | chr2:179434976;179434975;179434974 |
N2B | 16230 | 48913;48914;48915 | chr2:178570249;178570248;178570247 | chr2:179434976;179434975;179434974 |
Novex-1 | 16355 | 49288;49289;49290 | chr2:178570249;178570248;178570247 | chr2:179434976;179434975;179434974 |
Novex-2 | 16422 | 49489;49490;49491 | chr2:178570249;178570248;178570247 | chr2:179434976;179434975;179434974 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/L | None | None | 0.693 | N | 0.637 | 0.469 | 0.501874446873 | gnomAD-4.0.0 | 1.20032E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.3125E-06 | 0 | 0 |
P/T | rs1487092042 | None | 0.244 | N | 0.643 | 0.163 | 0.212008924253 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
P/T | rs1487092042 | None | 0.244 | N | 0.643 | 0.163 | 0.212008924253 | gnomAD-4.0.0 | 3.8457E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 7.18174E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/A | 0.0577 | likely_benign | 0.0566 | benign | -0.698 | Destabilizing | 0.244 | N | 0.57 | neutral | N | 0.475130669 | None | None | N |
P/C | 0.4229 | ambiguous | 0.3935 | ambiguous | -0.693 | Destabilizing | 0.958 | D | 0.791 | deleterious | None | None | None | None | N |
P/D | 0.5848 | likely_pathogenic | 0.5523 | ambiguous | -0.492 | Destabilizing | 0.6 | D | 0.677 | prob.neutral | None | None | None | None | N |
P/E | 0.3769 | ambiguous | 0.3534 | ambiguous | -0.598 | Destabilizing | 0.6 | D | 0.683 | prob.neutral | None | None | None | None | N |
P/F | 0.578 | likely_pathogenic | 0.5471 | ambiguous | -0.81 | Destabilizing | 0.958 | D | 0.777 | deleterious | None | None | None | None | N |
P/G | 0.2815 | likely_benign | 0.2731 | benign | -0.861 | Destabilizing | 0.299 | N | 0.643 | neutral | None | None | None | None | N |
P/H | 0.2946 | likely_benign | 0.2815 | benign | -0.346 | Destabilizing | 0.958 | D | 0.747 | deleterious | None | None | None | None | N |
P/I | 0.3355 | likely_benign | 0.2976 | benign | -0.409 | Destabilizing | 0.749 | D | 0.761 | deleterious | None | None | None | None | N |
P/K | 0.3701 | ambiguous | 0.3576 | ambiguous | -0.606 | Destabilizing | 0.6 | D | 0.679 | prob.neutral | None | None | None | None | N |
P/L | 0.1626 | likely_benign | 0.1485 | benign | -0.409 | Destabilizing | 0.693 | D | 0.637 | neutral | N | 0.480252647 | None | None | N |
P/M | 0.309 | likely_benign | 0.2811 | benign | -0.373 | Destabilizing | 0.986 | D | 0.746 | deleterious | None | None | None | None | N |
P/N | 0.4083 | ambiguous | 0.3676 | ambiguous | -0.338 | Destabilizing | 0.6 | D | 0.691 | prob.delet. | None | None | None | None | N |
P/Q | 0.2313 | likely_benign | 0.2179 | benign | -0.613 | Destabilizing | 0.693 | D | 0.69 | prob.delet. | N | 0.491395143 | None | None | N |
P/R | 0.2652 | likely_benign | 0.2606 | benign | -0.015 | Destabilizing | 0.693 | D | 0.711 | prob.delet. | N | 0.486786787 | None | None | N |
P/S | 0.1453 | likely_benign | 0.1261 | benign | -0.732 | Destabilizing | 0.002 | N | 0.339 | neutral | N | 0.477454717 | None | None | N |
P/T | 0.119 | likely_benign | 0.1049 | benign | -0.739 | Destabilizing | 0.244 | N | 0.643 | neutral | N | 0.481480415 | None | None | N |
P/V | 0.1963 | likely_benign | 0.1844 | benign | -0.469 | Destabilizing | 0.749 | D | 0.693 | prob.delet. | None | None | None | None | N |
P/W | 0.7363 | likely_pathogenic | 0.7062 | pathogenic | -0.869 | Destabilizing | 0.986 | D | 0.747 | deleterious | None | None | None | None | N |
P/Y | 0.5664 | likely_pathogenic | 0.5382 | ambiguous | -0.584 | Destabilizing | 0.958 | D | 0.776 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.