Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 25387 | 76384;76385;76386 | chr2:178569973;178569972;178569971 | chr2:179434700;179434699;179434698 |
N2AB | 23746 | 71461;71462;71463 | chr2:178569973;178569972;178569971 | chr2:179434700;179434699;179434698 |
N2A | 22819 | 68680;68681;68682 | chr2:178569973;178569972;178569971 | chr2:179434700;179434699;179434698 |
N2B | 16322 | 49189;49190;49191 | chr2:178569973;178569972;178569971 | chr2:179434700;179434699;179434698 |
Novex-1 | 16447 | 49564;49565;49566 | chr2:178569973;178569972;178569971 | chr2:179434700;179434699;179434698 |
Novex-2 | 16514 | 49765;49766;49767 | chr2:178569973;178569972;178569971 | chr2:179434700;179434699;179434698 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs879225322 | None | 0.942 | N | 0.691 | 0.186 | None | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | I | None | 0 | 0 | 1.09649E-03 | 0 | 0 | None | 0 | 0 | 0 | 0 | 4.78011E-04 |
L/F | rs879225322 | None | 0.942 | N | 0.691 | 0.186 | None | gnomAD-4.0.0 | 4.3417E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 4.241E-06 | 0 | 1.60267E-05 |
L/I | None | None | 0.058 | N | 0.296 | 0.055 | 0.371344866733 | gnomAD-4.0.0 | 6.84812E-07 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.16063E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.2023 | likely_benign | 0.2269 | benign | -1.326 | Destabilizing | 0.559 | D | 0.637 | neutral | None | None | None | None | I |
L/C | 0.3867 | ambiguous | 0.3992 | ambiguous | -0.888 | Destabilizing | 0.998 | D | 0.732 | prob.delet. | None | None | None | None | I |
L/D | 0.6659 | likely_pathogenic | 0.6528 | pathogenic | -0.525 | Destabilizing | 0.993 | D | 0.803 | deleterious | None | None | None | None | I |
L/E | 0.3921 | ambiguous | 0.387 | ambiguous | -0.576 | Destabilizing | 0.978 | D | 0.8 | deleterious | None | None | None | None | I |
L/F | 0.1189 | likely_benign | 0.1119 | benign | -1.093 | Destabilizing | 0.942 | D | 0.691 | prob.neutral | N | 0.452176452 | None | None | I |
L/G | 0.4847 | ambiguous | 0.503 | ambiguous | -1.569 | Destabilizing | 0.978 | D | 0.796 | deleterious | None | None | None | None | I |
L/H | 0.2422 | likely_benign | 0.2355 | benign | -0.682 | Destabilizing | 0.997 | D | 0.808 | deleterious | N | 0.507549732 | None | None | I |
L/I | 0.0756 | likely_benign | 0.0808 | benign | -0.768 | Destabilizing | 0.058 | N | 0.296 | neutral | N | 0.400824912 | None | None | I |
L/K | 0.2727 | likely_benign | 0.2771 | benign | -0.666 | Destabilizing | 0.978 | D | 0.807 | deleterious | None | None | None | None | I |
L/M | 0.1056 | likely_benign | 0.1169 | benign | -0.571 | Destabilizing | 0.978 | D | 0.691 | prob.neutral | None | None | None | None | I |
L/N | 0.3027 | likely_benign | 0.3137 | benign | -0.455 | Destabilizing | 0.993 | D | 0.809 | deleterious | None | None | None | None | I |
L/P | 0.2032 | likely_benign | 0.2246 | benign | -0.921 | Destabilizing | 0.99 | D | 0.805 | deleterious | N | 0.456312835 | None | None | I |
L/Q | 0.1662 | likely_benign | 0.17 | benign | -0.717 | Destabilizing | 0.993 | D | 0.809 | deleterious | None | None | None | None | I |
L/R | 0.2279 | likely_benign | 0.2125 | benign | -0.041 | Destabilizing | 0.97 | D | 0.807 | deleterious | N | 0.460430576 | None | None | I |
L/S | 0.2531 | likely_benign | 0.2649 | benign | -1.08 | Destabilizing | 0.978 | D | 0.778 | deleterious | None | None | None | None | I |
L/T | 0.1853 | likely_benign | 0.2043 | benign | -1.019 | Destabilizing | 0.86 | D | 0.684 | prob.neutral | None | None | None | None | I |
L/V | 0.0776 | likely_benign | 0.0835 | benign | -0.921 | Destabilizing | 0.006 | N | 0.334 | neutral | N | 0.364845469 | None | None | I |
L/W | 0.3061 | likely_benign | 0.2568 | benign | -1.047 | Destabilizing | 0.998 | D | 0.801 | deleterious | None | None | None | None | I |
L/Y | 0.3151 | likely_benign | 0.3106 | benign | -0.819 | Destabilizing | 0.978 | D | 0.743 | deleterious | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.