Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 25514 | 76765;76766;76767 | chr2:178569592;178569591;178569590 | chr2:179434319;179434318;179434317 |
N2AB | 23873 | 71842;71843;71844 | chr2:178569592;178569591;178569590 | chr2:179434319;179434318;179434317 |
N2A | 22946 | 69061;69062;69063 | chr2:178569592;178569591;178569590 | chr2:179434319;179434318;179434317 |
N2B | 16449 | 49570;49571;49572 | chr2:178569592;178569591;178569590 | chr2:179434319;179434318;179434317 |
Novex-1 | 16574 | 49945;49946;49947 | chr2:178569592;178569591;178569590 | chr2:179434319;179434318;179434317 |
Novex-2 | 16641 | 50146;50147;50148 | chr2:178569592;178569591;178569590 | chr2:179434319;179434318;179434317 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/P | rs1553601755 | None | 0.003 | N | 0.381 | 0.212 | 0.604659335069 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
L/P | rs1553601755 | None | 0.003 | N | 0.381 | 0.212 | 0.604659335069 | gnomAD-4.0.0 | 6.57687E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.4708E-05 | 0 | 0 |
L/V | None | None | 0.001 | N | 0.203 | 0.038 | 0.141422826196 | gnomAD-4.0.0 | 1.59377E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.86134E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.1513 | likely_benign | 0.1543 | benign | -0.392 | Destabilizing | 0.002 | N | 0.234 | neutral | None | None | None | None | N |
L/C | 0.5581 | ambiguous | 0.5798 | pathogenic | -0.673 | Destabilizing | 0.965 | D | 0.468 | neutral | None | None | None | None | N |
L/D | 0.6641 | likely_pathogenic | 0.6893 | pathogenic | -0.261 | Destabilizing | 0.561 | D | 0.537 | neutral | None | None | None | None | N |
L/E | 0.4623 | ambiguous | 0.469 | ambiguous | -0.354 | Destabilizing | 0.561 | D | 0.475 | neutral | None | None | None | None | N |
L/F | 0.1629 | likely_benign | 0.1702 | benign | -0.558 | Destabilizing | 0.818 | D | 0.379 | neutral | None | None | None | None | N |
L/G | 0.3798 | ambiguous | 0.3861 | ambiguous | -0.501 | Destabilizing | 0.209 | N | 0.399 | neutral | None | None | None | None | N |
L/H | 0.2671 | likely_benign | 0.2926 | benign | 0.134 | Stabilizing | 0.965 | D | 0.495 | neutral | None | None | None | None | N |
L/I | 0.0881 | likely_benign | 0.0962 | benign | -0.227 | Destabilizing | 0.166 | N | 0.275 | neutral | N | 0.444568194 | None | None | N |
L/K | 0.4007 | ambiguous | 0.3905 | ambiguous | -0.293 | Destabilizing | 0.561 | D | 0.437 | neutral | None | None | None | None | N |
L/M | 0.0999 | likely_benign | 0.0856 | benign | -0.517 | Destabilizing | 0.047 | N | 0.209 | neutral | None | None | None | None | N |
L/N | 0.2967 | likely_benign | 0.3065 | benign | -0.118 | Destabilizing | 0.561 | D | 0.567 | neutral | None | None | None | None | N |
L/P | 0.1543 | likely_benign | 0.2074 | benign | -0.254 | Destabilizing | 0.003 | N | 0.381 | neutral | N | 0.444048119 | None | None | N |
L/Q | 0.1822 | likely_benign | 0.188 | benign | -0.311 | Destabilizing | 0.873 | D | 0.572 | neutral | N | 0.443701402 | None | None | N |
L/R | 0.3468 | ambiguous | 0.3605 | ambiguous | 0.182 | Stabilizing | 0.662 | D | 0.562 | neutral | N | 0.443701402 | None | None | N |
L/S | 0.1956 | likely_benign | 0.1988 | benign | -0.488 | Destabilizing | 0.047 | N | 0.35 | neutral | None | None | None | None | N |
L/T | 0.1669 | likely_benign | 0.1698 | benign | -0.482 | Destabilizing | 0.345 | N | 0.366 | neutral | None | None | None | None | N |
L/V | 0.0837 | likely_benign | 0.0883 | benign | -0.254 | Destabilizing | 0.001 | N | 0.203 | neutral | N | 0.444048119 | None | None | N |
L/W | 0.3161 | likely_benign | 0.3388 | benign | -0.591 | Destabilizing | 0.991 | D | 0.499 | neutral | None | None | None | None | N |
L/Y | 0.3704 | ambiguous | 0.384 | ambiguous | -0.341 | Destabilizing | 0.901 | D | 0.501 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.