Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 25537 | 76834;76835;76836 | chr2:178569523;178569522;178569521 | chr2:179434250;179434249;179434248 |
N2AB | 23896 | 71911;71912;71913 | chr2:178569523;178569522;178569521 | chr2:179434250;179434249;179434248 |
N2A | 22969 | 69130;69131;69132 | chr2:178569523;178569522;178569521 | chr2:179434250;179434249;179434248 |
N2B | 16472 | 49639;49640;49641 | chr2:178569523;178569522;178569521 | chr2:179434250;179434249;179434248 |
Novex-1 | 16597 | 50014;50015;50016 | chr2:178569523;178569522;178569521 | chr2:179434250;179434249;179434248 |
Novex-2 | 16664 | 50215;50216;50217 | chr2:178569523;178569522;178569521 | chr2:179434250;179434249;179434248 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs527631472 | -0.196 | 1.0 | N | 0.67 | 0.474 | 0.608244025668 | gnomAD-2.1.1 | 8.07E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 5.61E-05 | None | 0 | None | 0 | 8.91E-06 | 0 |
R/C | rs527631472 | -0.196 | 1.0 | N | 0.67 | 0.474 | 0.608244025668 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
R/C | rs527631472 | -0.196 | 1.0 | N | 0.67 | 0.474 | 0.608244025668 | 1000 genomes | 1.99681E-04 | None | None | None | None | I | None | 0 | 0 | None | None | 0 | 1E-03 | None | None | None | 0 | None |
R/C | rs527631472 | -0.196 | 1.0 | N | 0.67 | 0.474 | 0.608244025668 | gnomAD-4.0.0 | 3.10092E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 2.23594E-05 | None | 0 | 0 | 2.54424E-06 | 1.09965E-05 | 0 |
R/G | rs527631472 | -0.288 | 0.998 | D | 0.583 | 0.468 | 0.613844073566 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 3.28E-05 | None | 0 | 0 | 0 |
R/G | rs527631472 | -0.288 | 0.998 | D | 0.583 | 0.468 | 0.613844073566 | gnomAD-4.0.0 | 2.05425E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 3.48303E-05 | 0 |
R/H | rs561977468 | -0.542 | 0.783 | D | 0.425 | 0.318 | None | gnomAD-2.1.1 | 1.397E-04 | None | None | None | None | I | None | 1.65412E-04 | 0 | None | 0 | 1.60074E-03 | None | 0 | None | 0 | 2.35E-05 | 1.41283E-04 |
R/H | rs561977468 | -0.542 | 0.783 | D | 0.425 | 0.318 | None | gnomAD-3.1.2 | 8.55E-05 | None | None | None | None | I | None | 1.20703E-04 | 0 | 0 | 0 | 9.67867E-04 | None | 0 | 0 | 4.41E-05 | 0 | 0 |
R/H | rs561977468 | -0.542 | 0.783 | D | 0.425 | 0.318 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | I | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
R/H | rs561977468 | -0.542 | 0.783 | D | 0.425 | 0.318 | None | gnomAD-4.0.0 | 4.65074E-05 | None | None | None | None | I | None | 1.20131E-04 | 1.66939E-05 | None | 0 | 6.25978E-04 | None | 0 | 1.65344E-04 | 2.28965E-05 | 4.39754E-05 | 8.01E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.9567 | likely_pathogenic | 0.9606 | pathogenic | 0.071 | Stabilizing | 0.996 | D | 0.635 | neutral | None | None | None | None | I |
R/C | 0.4251 | ambiguous | 0.4322 | ambiguous | -0.092 | Destabilizing | 1.0 | D | 0.67 | neutral | N | 0.506127669 | None | None | I |
R/D | 0.9875 | likely_pathogenic | 0.9887 | pathogenic | -0.213 | Destabilizing | 0.999 | D | 0.581 | neutral | None | None | None | None | I |
R/E | 0.9135 | likely_pathogenic | 0.9238 | pathogenic | -0.162 | Destabilizing | 0.992 | D | 0.603 | neutral | None | None | None | None | I |
R/F | 0.8532 | likely_pathogenic | 0.863 | pathogenic | -0.179 | Destabilizing | 0.999 | D | 0.629 | neutral | None | None | None | None | I |
R/G | 0.9404 | likely_pathogenic | 0.9455 | pathogenic | -0.099 | Destabilizing | 0.998 | D | 0.583 | neutral | D | 0.528586791 | None | None | I |
R/H | 0.2308 | likely_benign | 0.235 | benign | -0.61 | Destabilizing | 0.783 | D | 0.425 | neutral | D | 0.531211318 | None | None | I |
R/I | 0.6546 | likely_pathogenic | 0.6929 | pathogenic | 0.479 | Stabilizing | 1.0 | D | 0.628 | neutral | None | None | None | None | I |
R/K | 0.2173 | likely_benign | 0.2244 | benign | -0.047 | Destabilizing | 0.99 | D | 0.539 | neutral | None | None | None | None | I |
R/L | 0.7306 | likely_pathogenic | 0.7423 | pathogenic | 0.479 | Stabilizing | 0.999 | D | 0.568 | neutral | D | 0.530864601 | None | None | I |
R/M | 0.7804 | likely_pathogenic | 0.7892 | pathogenic | 0.04 | Stabilizing | 1.0 | D | 0.59 | neutral | None | None | None | None | I |
R/N | 0.9363 | likely_pathogenic | 0.9448 | pathogenic | 0.14 | Stabilizing | 0.992 | D | 0.592 | neutral | None | None | None | None | I |
R/P | 0.997 | likely_pathogenic | 0.997 | pathogenic | 0.362 | Stabilizing | 1.0 | D | 0.611 | neutral | D | 0.52884028 | None | None | I |
R/Q | 0.3055 | likely_benign | 0.3174 | benign | 0.065 | Stabilizing | 0.999 | D | 0.582 | neutral | None | None | None | None | I |
R/S | 0.9491 | likely_pathogenic | 0.954 | pathogenic | -0.099 | Destabilizing | 0.998 | D | 0.613 | neutral | D | 0.522647762 | None | None | I |
R/T | 0.8833 | likely_pathogenic | 0.9012 | pathogenic | 0.071 | Stabilizing | 1.0 | D | 0.575 | neutral | None | None | None | None | I |
R/V | 0.7936 | likely_pathogenic | 0.8167 | pathogenic | 0.362 | Stabilizing | 1.0 | D | 0.618 | neutral | None | None | None | None | I |
R/W | 0.4497 | ambiguous | 0.4626 | ambiguous | -0.305 | Destabilizing | 1.0 | D | 0.682 | prob.neutral | None | None | None | None | I |
R/Y | 0.655 | likely_pathogenic | 0.6803 | pathogenic | 0.102 | Stabilizing | 0.998 | D | 0.605 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.