Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 25927 | 78004;78005;78006 | chr2:178568353;178568352;178568351 | chr2:179433080;179433079;179433078 |
N2AB | 24286 | 73081;73082;73083 | chr2:178568353;178568352;178568351 | chr2:179433080;179433079;179433078 |
N2A | 23359 | 70300;70301;70302 | chr2:178568353;178568352;178568351 | chr2:179433080;179433079;179433078 |
N2B | 16862 | 50809;50810;50811 | chr2:178568353;178568352;178568351 | chr2:179433080;179433079;179433078 |
Novex-1 | 16987 | 51184;51185;51186 | chr2:178568353;178568352;178568351 | chr2:179433080;179433079;179433078 |
Novex-2 | 17054 | 51385;51386;51387 | chr2:178568353;178568352;178568351 | chr2:179433080;179433079;179433078 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/L | rs780196850 | -1.403 | 0.025 | N | 0.427 | 0.094 | None | gnomAD-2.1.1 | 1.79E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 3.91E-05 | 0 |
I/L | rs780196850 | -1.403 | 0.025 | N | 0.427 | 0.094 | None | gnomAD-3.1.2 | 1.31E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
I/L | rs780196850 | -1.403 | 0.025 | N | 0.427 | 0.094 | None | gnomAD-4.0.0 | 4.52491E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 5.0864E-05 | 0 | 2.08247E-04 |
I/M | rs1226545466 | -1.713 | 0.497 | N | 0.647 | 0.203 | 0.423480098753 | gnomAD-2.1.1 | 8.05E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 1.78E-05 | 0 |
I/M | rs1226545466 | -1.713 | 0.497 | N | 0.647 | 0.203 | 0.423480098753 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
I/M | rs1226545466 | -1.713 | 0.497 | N | 0.647 | 0.203 | 0.423480098753 | gnomAD-4.0.0 | 1.11574E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.52592E-05 | 0 | 0 |
I/T | rs905403082 | -2.947 | 0.124 | N | 0.595 | 0.269 | 0.549545986626 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.88E-06 | 0 |
I/T | rs905403082 | -2.947 | 0.124 | N | 0.595 | 0.269 | 0.549545986626 | gnomAD-4.0.0 | 2.05314E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.79919E-06 | 0 | 1.65739E-05 |
I/V | rs780196850 | -1.938 | None | N | 0.241 | 0.064 | 0.467585353272 | gnomAD-2.1.1 | 2.14E-05 | None | None | None | None | N | None | 4.14E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 3.91E-05 | 0 |
I/V | rs780196850 | -1.938 | None | N | 0.241 | 0.064 | 0.467585353272 | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 5.88E-05 | 0 | 0 |
I/V | rs780196850 | -1.938 | None | N | 0.241 | 0.064 | 0.467585353272 | gnomAD-4.0.0 | 1.98352E-05 | None | None | None | None | N | None | 1.33511E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 2.62797E-05 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.5221 | ambiguous | 0.5829 | pathogenic | -2.837 | Highly Destabilizing | 0.072 | N | 0.567 | neutral | None | None | None | None | N |
I/C | 0.7746 | likely_pathogenic | 0.8 | pathogenic | -2.15 | Highly Destabilizing | 0.909 | D | 0.673 | neutral | None | None | None | None | N |
I/D | 0.9507 | likely_pathogenic | 0.9633 | pathogenic | -3.203 | Highly Destabilizing | 0.726 | D | 0.717 | prob.delet. | None | None | None | None | N |
I/E | 0.8692 | likely_pathogenic | 0.8913 | pathogenic | -3.025 | Highly Destabilizing | 0.726 | D | 0.706 | prob.neutral | None | None | None | None | N |
I/F | 0.3134 | likely_benign | 0.401 | ambiguous | -1.723 | Destabilizing | 0.497 | N | 0.628 | neutral | N | 0.478014602 | None | None | N |
I/G | 0.8981 | likely_pathogenic | 0.9244 | pathogenic | -3.318 | Highly Destabilizing | 0.726 | D | 0.696 | prob.neutral | None | None | None | None | N |
I/H | 0.68 | likely_pathogenic | 0.7503 | pathogenic | -2.577 | Highly Destabilizing | 0.968 | D | 0.73 | prob.delet. | None | None | None | None | N |
I/K | 0.5607 | ambiguous | 0.633 | pathogenic | -2.23 | Highly Destabilizing | 0.726 | D | 0.707 | prob.neutral | None | None | None | None | N |
I/L | 0.2304 | likely_benign | 0.2676 | benign | -1.453 | Destabilizing | 0.025 | N | 0.427 | neutral | N | 0.467201275 | None | None | N |
I/M | 0.1649 | likely_benign | 0.1888 | benign | -1.424 | Destabilizing | 0.497 | N | 0.647 | neutral | N | 0.497702246 | None | None | N |
I/N | 0.5926 | likely_pathogenic | 0.66 | pathogenic | -2.477 | Highly Destabilizing | 0.859 | D | 0.731 | prob.delet. | N | 0.521807109 | None | None | N |
I/P | 0.9933 | likely_pathogenic | 0.9955 | pathogenic | -1.897 | Destabilizing | 0.89 | D | 0.718 | prob.delet. | None | None | None | None | N |
I/Q | 0.684 | likely_pathogenic | 0.7263 | pathogenic | -2.44 | Highly Destabilizing | 0.89 | D | 0.74 | deleterious | None | None | None | None | N |
I/R | 0.4551 | ambiguous | 0.5317 | ambiguous | -1.736 | Destabilizing | 0.726 | D | 0.732 | prob.delet. | None | None | None | None | N |
I/S | 0.5077 | ambiguous | 0.5649 | pathogenic | -3.133 | Highly Destabilizing | 0.497 | N | 0.655 | neutral | N | 0.468553947 | None | None | N |
I/T | 0.2042 | likely_benign | 0.2296 | benign | -2.831 | Highly Destabilizing | 0.124 | N | 0.595 | neutral | N | 0.487329176 | None | None | N |
I/V | 0.07 | likely_benign | 0.0694 | benign | -1.897 | Destabilizing | None | N | 0.241 | neutral | N | 0.453544676 | None | None | N |
I/W | 0.8964 | likely_pathogenic | 0.9189 | pathogenic | -2.047 | Highly Destabilizing | 0.968 | D | 0.723 | prob.delet. | None | None | None | None | N |
I/Y | 0.7318 | likely_pathogenic | 0.7877 | pathogenic | -1.854 | Destabilizing | 0.726 | D | 0.679 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.