Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 26022 | 78289;78290;78291 | chr2:178568068;178568067;178568066 | chr2:179432795;179432794;179432793 |
N2AB | 24381 | 73366;73367;73368 | chr2:178568068;178568067;178568066 | chr2:179432795;179432794;179432793 |
N2A | 23454 | 70585;70586;70587 | chr2:178568068;178568067;178568066 | chr2:179432795;179432794;179432793 |
N2B | 16957 | 51094;51095;51096 | chr2:178568068;178568067;178568066 | chr2:179432795;179432794;179432793 |
Novex-1 | 17082 | 51469;51470;51471 | chr2:178568068;178568067;178568066 | chr2:179432795;179432794;179432793 |
Novex-2 | 17149 | 51670;51671;51672 | chr2:178568068;178568067;178568066 | chr2:179432795;179432794;179432793 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/D | rs562356397 | -1.39 | 0.667 | D | 0.847 | 0.525 | 0.779176552023 | gnomAD-2.1.1 | 1.21E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 9.81E-05 | None | 0 | 0 | 0 |
V/D | rs562356397 | -1.39 | 0.667 | D | 0.847 | 0.525 | 0.779176552023 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 2.06954E-04 | 0 |
V/D | rs562356397 | -1.39 | 0.667 | D | 0.847 | 0.525 | 0.779176552023 | 1000 genomes | 1.99681E-04 | None | None | None | None | I | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 1E-03 | None |
V/D | rs562356397 | -1.39 | 0.667 | D | 0.847 | 0.525 | 0.779176552023 | gnomAD-4.0.0 | 2.47925E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 4.39194E-05 | 0 |
V/G | None | None | 0.667 | N | 0.841 | 0.509 | 0.744392159427 | gnomAD-4.0.0 | 2.05312E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.69882E-06 | 0 | 0 |
V/I | rs374764110 | -0.586 | 0.002 | N | 0.223 | 0.054 | None | gnomAD-2.1.1 | 8.96E-05 | None | None | None | None | I | None | 4.96196E-04 | 2.84E-05 | None | 0 | 0 | None | 0 | None | 0 | 8.64E-05 | 1.41203E-04 |
V/I | rs374764110 | -0.586 | 0.002 | N | 0.223 | 0.054 | None | gnomAD-3.1.2 | 1.84143E-04 | None | None | None | None | I | None | 5.79514E-04 | 0 | 0 | 0 | 0 | None | 0 | 0 | 5.88E-05 | 0 | 0 |
V/I | rs374764110 | -0.586 | 0.002 | N | 0.223 | 0.054 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | I | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
V/I | rs374764110 | -0.586 | 0.002 | N | 0.223 | 0.054 | None | gnomAD-4.0.0 | 5.45456E-05 | None | None | None | None | I | None | 5.20097E-04 | 1.66783E-05 | None | 0 | 0 | None | 0 | 1.65235E-04 | 3.56067E-05 | 1.09798E-05 | 6.40677E-05 |
V/L | rs374764110 | None | 0.022 | N | 0.44 | 0.116 | 0.326881540566 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 6.32911E-03 | 0 | 0 | 0 |
V/L | rs374764110 | None | 0.022 | N | 0.44 | 0.116 | 0.326881540566 | gnomAD-4.0.0 | 1.31428E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 6.80272E-03 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.878 | likely_pathogenic | 0.8954 | pathogenic | -1.831 | Destabilizing | 0.104 | N | 0.653 | neutral | N | 0.505098987 | None | None | I |
V/C | 0.9485 | likely_pathogenic | 0.9538 | pathogenic | -1.091 | Destabilizing | 0.968 | D | 0.731 | prob.delet. | None | None | None | None | I |
V/D | 0.9888 | likely_pathogenic | 0.9946 | pathogenic | -2.184 | Highly Destabilizing | 0.667 | D | 0.847 | deleterious | D | 0.522442773 | None | None | I |
V/E | 0.9744 | likely_pathogenic | 0.9851 | pathogenic | -2.097 | Highly Destabilizing | 0.726 | D | 0.831 | deleterious | None | None | None | None | I |
V/F | 0.8429 | likely_pathogenic | 0.8385 | pathogenic | -1.286 | Destabilizing | 0.715 | D | 0.782 | deleterious | N | 0.503071071 | None | None | I |
V/G | 0.9424 | likely_pathogenic | 0.9613 | pathogenic | -2.237 | Highly Destabilizing | 0.667 | D | 0.841 | deleterious | N | 0.512696311 | None | None | I |
V/H | 0.9897 | likely_pathogenic | 0.9936 | pathogenic | -1.956 | Destabilizing | 0.968 | D | 0.822 | deleterious | None | None | None | None | I |
V/I | 0.0647 | likely_benign | 0.062 | benign | -0.762 | Destabilizing | 0.002 | N | 0.223 | neutral | N | 0.388759692 | None | None | I |
V/K | 0.9814 | likely_pathogenic | 0.9872 | pathogenic | -1.583 | Destabilizing | 0.726 | D | 0.832 | deleterious | None | None | None | None | I |
V/L | 0.3786 | ambiguous | 0.4002 | ambiguous | -0.762 | Destabilizing | 0.022 | N | 0.44 | neutral | N | 0.516268003 | None | None | I |
V/M | 0.5419 | ambiguous | 0.5565 | ambiguous | -0.493 | Destabilizing | 0.567 | D | 0.67 | neutral | None | None | None | None | I |
V/N | 0.9185 | likely_pathogenic | 0.9701 | pathogenic | -1.532 | Destabilizing | 0.89 | D | 0.849 | deleterious | None | None | None | None | I |
V/P | 0.9157 | likely_pathogenic | 0.9338 | pathogenic | -1.087 | Destabilizing | 0.89 | D | 0.823 | deleterious | None | None | None | None | I |
V/Q | 0.9752 | likely_pathogenic | 0.9841 | pathogenic | -1.594 | Destabilizing | 0.89 | D | 0.819 | deleterious | None | None | None | None | I |
V/R | 0.9742 | likely_pathogenic | 0.9818 | pathogenic | -1.144 | Destabilizing | 0.726 | D | 0.852 | deleterious | None | None | None | None | I |
V/S | 0.9304 | likely_pathogenic | 0.9547 | pathogenic | -2.042 | Highly Destabilizing | 0.726 | D | 0.812 | deleterious | None | None | None | None | I |
V/T | 0.8442 | likely_pathogenic | 0.8725 | pathogenic | -1.846 | Destabilizing | 0.272 | N | 0.726 | prob.delet. | None | None | None | None | I |
V/W | 0.9959 | likely_pathogenic | 0.9962 | pathogenic | -1.694 | Destabilizing | 0.968 | D | 0.785 | deleterious | None | None | None | None | I |
V/Y | 0.9786 | likely_pathogenic | 0.9827 | pathogenic | -1.355 | Destabilizing | 0.726 | D | 0.758 | deleterious | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.