Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 2610 | 8053;8054;8055 | chr2:178773136;178773135;178773134 | chr2:179637863;179637862;179637861 |
N2AB | 2610 | 8053;8054;8055 | chr2:178773136;178773135;178773134 | chr2:179637863;179637862;179637861 |
N2A | 2610 | 8053;8054;8055 | chr2:178773136;178773135;178773134 | chr2:179637863;179637862;179637861 |
N2B | 2564 | 7915;7916;7917 | chr2:178773136;178773135;178773134 | chr2:179637863;179637862;179637861 |
Novex-1 | 2564 | 7915;7916;7917 | chr2:178773136;178773135;178773134 | chr2:179637863;179637862;179637861 |
Novex-2 | 2564 | 7915;7916;7917 | chr2:178773136;178773135;178773134 | chr2:179637863;179637862;179637861 |
Novex-3 | 2610 | 8053;8054;8055 | chr2:178773136;178773135;178773134 | chr2:179637863;179637862;179637861 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
M/I | rs56142888 | 0.31 | None | N | 0.117 | 0.104 | 0.337135696972 | gnomAD-2.1.1 | 7.52578E-02 | None | None | None | None | N | None | 1.12942E-02 | 2.37808E-01 | None | 4.85615E-02 | 2.00322E-01 | None | 1.84338E-02 | None | 5.3183E-02 | 4.43085E-02 | 6.37023E-02 |
M/I | rs56142888 | 0.31 | None | N | 0.117 | 0.104 | 0.337135696972 | gnomAD-3.1.2 | 4.98239E-02 | None | None | None | None | N | None | 1.16027E-02 | 1.37979E-01 | 4.82456E-02 | 4.89631E-02 | 1.83725E-01 | None | 5.13014E-02 | 1.58228E-02 | 4.51805E-02 | 2.2144E-02 | 4.63228E-02 |
M/I | rs56142888 | 0.31 | None | N | 0.117 | 0.104 | 0.337135696972 | 1000 genomes | 7.54792E-02 | None | None | None | None | N | None | 2.3E-03 | 1.715E-01 | None | None | 1.905E-01 | 4.87E-02 | None | None | None | 1.53E-02 | None |
M/I | rs56142888 | 0.31 | None | N | 0.117 | 0.104 | 0.337135696972 | gnomAD-4.0.0 | 5.24191E-02 | None | None | None | None | N | None | 1.05929E-02 | 2.0473E-01 | None | 4.7537E-02 | 1.88716E-01 | None | 5.40401E-02 | 1.6177E-02 | 4.49715E-02 | 1.97689E-02 | 5.11713E-02 |
M/L | None | None | 0.001 | N | 0.125 | 0.11 | 0.32980341726 | gnomAD-4.0.0 | 6.84169E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99361E-07 | 0 | 0 |
M/V | rs1331698925 | 0.143 | None | N | 0.121 | 0.085 | 0.363944505237 | gnomAD-2.1.1 | 3.99E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.83E-06 | 0 |
M/V | rs1331698925 | 0.143 | None | N | 0.121 | 0.085 | 0.363944505237 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 2.07039E-04 | 0 |
M/V | rs1331698925 | 0.143 | None | N | 0.121 | 0.085 | 0.363944505237 | gnomAD-4.0.0 | 1.85878E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.47509E-07 | 1.09815E-05 | 1.60005E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
M/A | 0.1831 | likely_benign | 0.2157 | benign | -0.881 | Destabilizing | 0.002 | N | 0.225 | neutral | None | None | None | None | N |
M/C | 0.4444 | ambiguous | 0.4019 | ambiguous | -0.682 | Destabilizing | 0.245 | N | 0.47 | neutral | None | None | None | None | N |
M/D | 0.6196 | likely_pathogenic | 0.6627 | pathogenic | 0.624 | Stabilizing | 0.018 | N | 0.378 | neutral | None | None | None | None | N |
M/E | 0.1719 | likely_benign | 0.194 | benign | 0.645 | Stabilizing | 0.004 | N | 0.273 | neutral | None | None | None | None | N |
M/F | 0.2888 | likely_benign | 0.2732 | benign | -0.065 | Destabilizing | 0.085 | N | 0.45 | neutral | None | None | None | None | N |
M/G | 0.4317 | ambiguous | 0.4467 | ambiguous | -1.163 | Destabilizing | 0.008 | N | 0.299 | neutral | None | None | None | None | N |
M/H | 0.2642 | likely_benign | 0.2871 | benign | -0.213 | Destabilizing | None | N | 0.25 | neutral | None | None | None | None | N |
M/I | 0.1965 | likely_benign | 0.2176 | benign | -0.191 | Destabilizing | None | N | 0.117 | neutral | N | 0.413236192 | None | None | N |
M/K | 0.0645 | likely_benign | 0.0807 | benign | 0.295 | Stabilizing | None | N | 0.171 | neutral | N | 0.308536078 | None | None | N |
M/L | 0.1339 | likely_benign | 0.1534 | benign | -0.191 | Destabilizing | 0.001 | N | 0.125 | neutral | N | 0.420710628 | None | None | N |
M/N | 0.2929 | likely_benign | 0.3361 | benign | 0.357 | Stabilizing | 0.018 | N | 0.313 | neutral | None | None | None | None | N |
M/P | 0.8675 | likely_pathogenic | 0.9127 | pathogenic | -0.391 | Destabilizing | 0.037 | N | 0.485 | neutral | None | None | None | None | N |
M/Q | 0.096 | likely_benign | 0.1041 | benign | 0.335 | Stabilizing | 0.018 | N | 0.421 | neutral | None | None | None | None | N |
M/R | 0.0838 | likely_benign | 0.1023 | benign | 0.629 | Stabilizing | None | N | 0.184 | neutral | N | 0.392547113 | None | None | N |
M/S | 0.1829 | likely_benign | 0.1994 | benign | -0.283 | Destabilizing | 0.004 | N | 0.242 | neutral | None | None | None | None | N |
M/T | 0.0877 | likely_benign | 0.1143 | benign | -0.136 | Destabilizing | None | N | 0.171 | neutral | N | 0.319042843 | None | None | N |
M/V | 0.0705 | likely_benign | 0.0807 | benign | -0.391 | Destabilizing | None | N | 0.121 | neutral | N | 0.420710628 | None | None | N |
M/W | 0.5617 | ambiguous | 0.551 | ambiguous | -0.036 | Destabilizing | 0.497 | N | 0.467 | neutral | None | None | None | None | N |
M/Y | 0.4055 | ambiguous | 0.4068 | ambiguous | 0.051 | Stabilizing | 0.044 | N | 0.533 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.