Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 26144 | 78655;78656;78657 | chr2:178567702;178567701;178567700 | chr2:179432429;179432428;179432427 |
N2AB | 24503 | 73732;73733;73734 | chr2:178567702;178567701;178567700 | chr2:179432429;179432428;179432427 |
N2A | 23576 | 70951;70952;70953 | chr2:178567702;178567701;178567700 | chr2:179432429;179432428;179432427 |
N2B | 17079 | 51460;51461;51462 | chr2:178567702;178567701;178567700 | chr2:179432429;179432428;179432427 |
Novex-1 | 17204 | 51835;51836;51837 | chr2:178567702;178567701;178567700 | chr2:179432429;179432428;179432427 |
Novex-2 | 17271 | 52036;52037;52038 | chr2:178567702;178567701;178567700 | chr2:179432429;179432428;179432427 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/M | rs759786276 | -0.359 | 0.772 | N | 0.408 | 0.11 | None | gnomAD-2.1.1 | 8.08E-06 | None | None | None | None | I | None | 6.46E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.94E-06 | 0 |
I/M | rs759786276 | -0.359 | 0.772 | N | 0.408 | 0.11 | None | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | I | None | 4.83E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
I/M | rs759786276 | -0.359 | 0.772 | N | 0.408 | 0.11 | None | gnomAD-4.0.0 | 3.72256E-06 | None | None | None | None | I | None | 6.66773E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 8.48679E-07 | 0 | 0 |
I/N | None | None | 0.772 | N | 0.414 | 0.126 | 0.437527004654 | gnomAD-4.0.0 | 6.85105E-07 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.16031E-05 | 0 |
I/T | rs183015944 | -0.651 | 0.001 | N | 0.144 | 0.106 | None | gnomAD-2.1.1 | 1.69715E-04 | None | None | None | None | I | None | 1.29282E-04 | 3.48918E-04 | None | 0 | 1.11932E-04 | None | 6.88254E-04 | None | 4.67E-05 | 2.68E-05 | 1.67001E-04 |
I/T | rs183015944 | -0.651 | 0.001 | N | 0.144 | 0.106 | None | gnomAD-3.1.2 | 5.92E-05 | None | None | None | None | I | None | 1.20621E-04 | 0 | 0 | 0 | 0 | None | 9.42E-05 | 0 | 2.94E-05 | 2.07211E-04 | 0 |
I/T | rs183015944 | -0.651 | 0.001 | N | 0.144 | 0.106 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | I | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
I/T | rs183015944 | -0.651 | 0.001 | N | 0.144 | 0.106 | None | gnomAD-4.0.0 | 6.20404E-05 | None | None | None | None | I | None | 9.33308E-05 | 2.00214E-04 | None | 0 | 6.70541E-05 | None | 4.69395E-05 | 0 | 1.7822E-05 | 5.71391E-04 | 3.20492E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.2045 | likely_benign | 0.2668 | benign | -0.595 | Destabilizing | 0.209 | N | 0.337 | neutral | None | None | None | None | I |
I/C | 0.7807 | likely_pathogenic | 0.8042 | pathogenic | -0.694 | Destabilizing | 0.991 | D | 0.356 | neutral | None | None | None | None | I |
I/D | 0.8246 | likely_pathogenic | 0.8586 | pathogenic | 0.085 | Stabilizing | 0.561 | D | 0.42 | neutral | None | None | None | None | I |
I/E | 0.6608 | likely_pathogenic | 0.7159 | pathogenic | 0.006 | Stabilizing | 0.39 | N | 0.368 | neutral | None | None | None | None | I |
I/F | 0.2478 | likely_benign | 0.2721 | benign | -0.537 | Destabilizing | 0.772 | D | 0.37 | neutral | N | 0.478447828 | None | None | I |
I/G | 0.5757 | likely_pathogenic | 0.6574 | pathogenic | -0.763 | Destabilizing | 0.561 | D | 0.408 | neutral | None | None | None | None | I |
I/H | 0.615 | likely_pathogenic | 0.6598 | pathogenic | -0.024 | Destabilizing | 0.972 | D | 0.367 | neutral | None | None | None | None | I |
I/K | 0.4552 | ambiguous | 0.5154 | ambiguous | -0.298 | Destabilizing | 0.004 | N | 0.281 | neutral | None | None | None | None | I |
I/L | 0.0882 | likely_benign | 0.0927 | benign | -0.275 | Destabilizing | None | N | 0.074 | neutral | N | 0.404488787 | None | None | I |
I/M | 0.0841 | likely_benign | 0.0958 | benign | -0.403 | Destabilizing | 0.772 | D | 0.408 | neutral | N | 0.504306278 | None | None | I |
I/N | 0.3479 | ambiguous | 0.413 | ambiguous | -0.142 | Destabilizing | 0.772 | D | 0.414 | neutral | N | 0.444871185 | None | None | I |
I/P | 0.435 | ambiguous | 0.5034 | ambiguous | -0.348 | Destabilizing | 0.901 | D | 0.411 | neutral | None | None | None | None | I |
I/Q | 0.4518 | ambiguous | 0.5178 | ambiguous | -0.326 | Destabilizing | 0.818 | D | 0.414 | neutral | None | None | None | None | I |
I/R | 0.384 | ambiguous | 0.4161 | ambiguous | 0.206 | Stabilizing | 0.39 | N | 0.408 | neutral | None | None | None | None | I |
I/S | 0.253 | likely_benign | 0.3163 | benign | -0.643 | Destabilizing | 0.326 | N | 0.307 | neutral | N | 0.391730134 | None | None | I |
I/T | 0.097 | likely_benign | 0.1399 | benign | -0.61 | Destabilizing | 0.001 | N | 0.144 | neutral | N | 0.401696411 | None | None | I |
I/V | 0.1037 | likely_benign | 0.129 | benign | -0.348 | Destabilizing | 0.08 | N | 0.201 | neutral | N | 0.467865475 | None | None | I |
I/W | 0.8129 | likely_pathogenic | 0.8055 | pathogenic | -0.548 | Destabilizing | 0.991 | D | 0.401 | neutral | None | None | None | None | I |
I/Y | 0.6822 | likely_pathogenic | 0.6849 | pathogenic | -0.302 | Destabilizing | 0.965 | D | 0.389 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.