Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 26350 | 79273;79274;79275 | chr2:178567084;178567083;178567082 | chr2:179431811;179431810;179431809 |
N2AB | 24709 | 74350;74351;74352 | chr2:178567084;178567083;178567082 | chr2:179431811;179431810;179431809 |
N2A | 23782 | 71569;71570;71571 | chr2:178567084;178567083;178567082 | chr2:179431811;179431810;179431809 |
N2B | 17285 | 52078;52079;52080 | chr2:178567084;178567083;178567082 | chr2:179431811;179431810;179431809 |
Novex-1 | 17410 | 52453;52454;52455 | chr2:178567084;178567083;178567082 | chr2:179431811;179431810;179431809 |
Novex-2 | 17477 | 52654;52655;52656 | chr2:178567084;178567083;178567082 | chr2:179431811;179431810;179431809 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
K/R | rs1278375861 | 0.239 | 0.142 | N | 0.271 | 0.182 | 0.297375071883 | gnomAD-2.1.1 | 3.19E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 6.48E-05 | 0 |
K/R | rs1278375861 | 0.239 | 0.142 | N | 0.271 | 0.182 | 0.297375071883 | gnomAD-3.1.2 | 1.31E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
K/R | rs1278375861 | 0.239 | 0.142 | N | 0.271 | 0.182 | 0.297375071883 | gnomAD-4.0.0 | 3.09891E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 4.45911E-05 | None | 0 | 0 | 2.54318E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
K/A | 0.8539 | likely_pathogenic | 0.8442 | pathogenic | 0.028 | Stabilizing | 0.968 | D | 0.608 | neutral | None | None | None | None | N |
K/C | 0.9034 | likely_pathogenic | 0.893 | pathogenic | -0.42 | Destabilizing | 1.0 | D | 0.735 | prob.delet. | None | None | None | None | N |
K/D | 0.9223 | likely_pathogenic | 0.9043 | pathogenic | -0.172 | Destabilizing | 0.995 | D | 0.702 | prob.neutral | None | None | None | None | N |
K/E | 0.866 | likely_pathogenic | 0.8386 | pathogenic | -0.169 | Destabilizing | 0.958 | D | 0.581 | neutral | N | 0.51945745 | None | None | N |
K/F | 0.9835 | likely_pathogenic | 0.9813 | pathogenic | -0.242 | Destabilizing | 1.0 | D | 0.713 | prob.delet. | None | None | None | None | N |
K/G | 0.7399 | likely_pathogenic | 0.7065 | pathogenic | -0.128 | Destabilizing | 0.991 | D | 0.644 | neutral | None | None | None | None | N |
K/H | 0.5279 | ambiguous | 0.4807 | ambiguous | -0.202 | Destabilizing | 0.999 | D | 0.677 | prob.neutral | None | None | None | None | N |
K/I | 0.9636 | likely_pathogenic | 0.9621 | pathogenic | 0.359 | Stabilizing | 0.994 | D | 0.721 | prob.delet. | N | 0.495723556 | None | None | N |
K/L | 0.8945 | likely_pathogenic | 0.8867 | pathogenic | 0.359 | Stabilizing | 0.991 | D | 0.644 | neutral | None | None | None | None | N |
K/M | 0.8681 | likely_pathogenic | 0.8621 | pathogenic | -0.059 | Destabilizing | 1.0 | D | 0.675 | neutral | None | None | None | None | N |
K/N | 0.8205 | likely_pathogenic | 0.7941 | pathogenic | 0.029 | Stabilizing | 0.988 | D | 0.733 | prob.delet. | N | 0.442436674 | None | None | N |
K/P | 0.9654 | likely_pathogenic | 0.9645 | pathogenic | 0.274 | Stabilizing | 0.998 | D | 0.676 | prob.neutral | None | None | None | None | N |
K/Q | 0.5124 | ambiguous | 0.4602 | ambiguous | -0.096 | Destabilizing | 0.988 | D | 0.735 | prob.delet. | N | 0.494456108 | None | None | N |
K/R | 0.0987 | likely_benign | 0.0851 | benign | -0.038 | Destabilizing | 0.142 | N | 0.271 | neutral | N | 0.471319573 | None | None | N |
K/S | 0.8449 | likely_pathogenic | 0.8267 | pathogenic | -0.359 | Destabilizing | 0.968 | D | 0.655 | neutral | None | None | None | None | N |
K/T | 0.8123 | likely_pathogenic | 0.8042 | pathogenic | -0.228 | Destabilizing | 0.988 | D | 0.695 | prob.neutral | N | 0.47331366 | None | None | N |
K/V | 0.9195 | likely_pathogenic | 0.9148 | pathogenic | 0.274 | Stabilizing | 0.995 | D | 0.679 | prob.neutral | None | None | None | None | N |
K/W | 0.9658 | likely_pathogenic | 0.9549 | pathogenic | -0.332 | Destabilizing | 1.0 | D | 0.741 | deleterious | None | None | None | None | N |
K/Y | 0.9267 | likely_pathogenic | 0.9122 | pathogenic | 0.022 | Stabilizing | 0.998 | D | 0.699 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.