Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 26506 | 79741;79742;79743 | chr2:178566616;178566615;178566614 | chr2:179431343;179431342;179431341 |
N2AB | 24865 | 74818;74819;74820 | chr2:178566616;178566615;178566614 | chr2:179431343;179431342;179431341 |
N2A | 23938 | 72037;72038;72039 | chr2:178566616;178566615;178566614 | chr2:179431343;179431342;179431341 |
N2B | 17441 | 52546;52547;52548 | chr2:178566616;178566615;178566614 | chr2:179431343;179431342;179431341 |
Novex-1 | 17566 | 52921;52922;52923 | chr2:178566616;178566615;178566614 | chr2:179431343;179431342;179431341 |
Novex-2 | 17633 | 53122;53123;53124 | chr2:178566616;178566615;178566614 | chr2:179431343;179431342;179431341 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs371783508 | -1.442 | 0.001 | N | 0.379 | 0.228 | None | gnomAD-2.1.1 | 8.08E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 1.78E-05 | 0 |
L/F | rs371783508 | -1.442 | 0.001 | N | 0.379 | 0.228 | None | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 2.07297E-04 | 0 |
L/F | rs371783508 | -1.442 | 0.001 | N | 0.379 | 0.228 | None | gnomAD-4.0.0 | 2.10873E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.37354E-05 | 1.09798E-05 | 8.00794E-05 |
L/I | None | None | 0.033 | N | 0.621 | 0.059 | 0.335164054921 | gnomAD-4.0.0 | 1.36958E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 2.31879E-05 | 0 |
L/P | rs1197368510 | None | 0.912 | D | 0.895 | 0.654 | 0.855987637376 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
L/P | rs1197368510 | None | 0.912 | D | 0.895 | 0.654 | 0.855987637376 | gnomAD-4.0.0 | 3.84946E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 7.18098E-06 | 0 | 0 |
L/V | None | None | 0.001 | N | 0.269 | 0.069 | 0.318540980066 | gnomAD-4.0.0 | 6.84792E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99533E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.566 | likely_pathogenic | 0.4915 | ambiguous | -2.923 | Highly Destabilizing | 0.116 | N | 0.713 | prob.delet. | None | None | None | None | N |
L/C | 0.6847 | likely_pathogenic | 0.6477 | pathogenic | -2.062 | Highly Destabilizing | 0.944 | D | 0.809 | deleterious | None | None | None | None | N |
L/D | 0.9964 | likely_pathogenic | 0.9953 | pathogenic | -3.8 | Highly Destabilizing | 0.932 | D | 0.892 | deleterious | None | None | None | None | N |
L/E | 0.9797 | likely_pathogenic | 0.9758 | pathogenic | -3.478 | Highly Destabilizing | 0.818 | D | 0.871 | deleterious | None | None | None | None | N |
L/F | 0.2397 | likely_benign | 0.2215 | benign | -1.859 | Destabilizing | 0.001 | N | 0.379 | neutral | N | 0.51811436 | None | None | N |
L/G | 0.9343 | likely_pathogenic | 0.9102 | pathogenic | -3.514 | Highly Destabilizing | 0.818 | D | 0.847 | deleterious | None | None | None | None | N |
L/H | 0.9385 | likely_pathogenic | 0.9342 | pathogenic | -3.245 | Highly Destabilizing | 0.975 | D | 0.898 | deleterious | D | 0.546133343 | None | None | N |
L/I | 0.0702 | likely_benign | 0.0686 | benign | -1.129 | Destabilizing | 0.033 | N | 0.621 | neutral | N | 0.495121939 | None | None | N |
L/K | 0.973 | likely_pathogenic | 0.9733 | pathogenic | -2.493 | Highly Destabilizing | 0.818 | D | 0.832 | deleterious | None | None | None | None | N |
L/M | 0.1471 | likely_benign | 0.1353 | benign | -1.202 | Destabilizing | 0.69 | D | 0.647 | neutral | None | None | None | None | N |
L/N | 0.9771 | likely_pathogenic | 0.972 | pathogenic | -3.263 | Highly Destabilizing | 0.932 | D | 0.895 | deleterious | None | None | None | None | N |
L/P | 0.9702 | likely_pathogenic | 0.9669 | pathogenic | -1.721 | Destabilizing | 0.912 | D | 0.895 | deleterious | D | 0.545879854 | None | None | N |
L/Q | 0.9337 | likely_pathogenic | 0.93 | pathogenic | -2.901 | Highly Destabilizing | 0.932 | D | 0.879 | deleterious | None | None | None | None | N |
L/R | 0.9484 | likely_pathogenic | 0.9468 | pathogenic | -2.491 | Highly Destabilizing | 0.773 | D | 0.874 | deleterious | D | 0.545879854 | None | None | N |
L/S | 0.9058 | likely_pathogenic | 0.8752 | pathogenic | -3.746 | Highly Destabilizing | 0.69 | D | 0.826 | deleterious | None | None | None | None | N |
L/T | 0.6501 | likely_pathogenic | 0.5913 | pathogenic | -3.266 | Highly Destabilizing | 0.388 | N | 0.729 | prob.delet. | None | None | None | None | N |
L/V | 0.0646 | likely_benign | 0.061 | benign | -1.721 | Destabilizing | 0.001 | N | 0.269 | neutral | N | 0.494599078 | None | None | N |
L/W | 0.7964 | likely_pathogenic | 0.79 | pathogenic | -2.298 | Highly Destabilizing | 0.981 | D | 0.878 | deleterious | None | None | None | None | N |
L/Y | 0.8144 | likely_pathogenic | 0.8051 | pathogenic | -2.099 | Highly Destabilizing | 0.527 | D | 0.799 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.