Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 26507 | 79744;79745;79746 | chr2:178566613;178566612;178566611 | chr2:179431340;179431339;179431338 |
N2AB | 24866 | 74821;74822;74823 | chr2:178566613;178566612;178566611 | chr2:179431340;179431339;179431338 |
N2A | 23939 | 72040;72041;72042 | chr2:178566613;178566612;178566611 | chr2:179431340;179431339;179431338 |
N2B | 17442 | 52549;52550;52551 | chr2:178566613;178566612;178566611 | chr2:179431340;179431339;179431338 |
Novex-1 | 17567 | 52924;52925;52926 | chr2:178566613;178566612;178566611 | chr2:179431340;179431339;179431338 |
Novex-2 | 17634 | 53125;53126;53127 | chr2:178566613;178566612;178566611 | chr2:179431340;179431339;179431338 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/D | rs538057461 | -2.199 | 0.782 | N | 0.679 | 0.266 | 0.508046185061 | gnomAD-2.1.1 | 1.08E-05 | None | None | None | None | N | None | 0 | 5.66E-05 | None | 0 | 0 | None | 0 | None | 0 | 0 | 1.40607E-04 |
A/D | rs538057461 | -2.199 | 0.782 | N | 0.679 | 0.266 | 0.508046185061 | gnomAD-3.1.2 | 7.89E-05 | None | None | None | None | N | None | 0 | 7.87092E-04 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
A/D | rs538057461 | -2.199 | 0.782 | N | 0.679 | 0.266 | 0.508046185061 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
A/D | rs538057461 | -2.199 | 0.782 | N | 0.679 | 0.266 | 0.508046185061 | gnomAD-4.0.0 | 2.69459E-05 | None | None | None | None | N | None | 0 | 2.88145E-04 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 1.13766E-04 |
A/S | None | None | 0.038 | N | 0.481 | 0.056 | 0.0954503805726 | gnomAD-4.0.0 | 1.36955E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.79906E-06 | 0 | 0 |
A/T | rs554718474 | -0.83 | 0.007 | N | 0.456 | 0.065 | 0.146414634003 | gnomAD-2.1.1 | 1.43E-05 | None | None | None | None | N | None | 0 | 5.66E-05 | None | 0 | 0 | None | 0 | None | 0 | 7.83E-06 | 1.40647E-04 |
A/T | rs554718474 | -0.83 | 0.007 | N | 0.456 | 0.065 | 0.146414634003 | gnomAD-3.1.2 | 7.89E-05 | None | None | None | None | N | None | 0 | 7.86885E-04 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
A/T | rs554718474 | -0.83 | 0.007 | N | 0.456 | 0.065 | 0.146414634003 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
A/T | rs554718474 | -0.83 | 0.007 | N | 0.456 | 0.065 | 0.146414634003 | gnomAD-4.0.0 | 1.55037E-05 | None | None | None | None | N | None | 0 | 2.8339E-04 | None | 0 | 0 | None | 0 | 0 | 3.39075E-06 | 0 | 6.40451E-05 |
A/V | rs538057461 | 0.57 | 0.007 | N | 0.437 | 0.163 | 0.298403945805 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.91E-06 | 0 |
A/V | rs538057461 | 0.57 | 0.007 | N | 0.437 | 0.163 | 0.298403945805 | gnomAD-4.0.0 | 1.59444E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.85891E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/C | 0.3043 | likely_benign | 0.2935 | benign | -1.043 | Destabilizing | 0.973 | D | 0.629 | neutral | None | None | None | None | N |
A/D | 0.4671 | ambiguous | 0.3925 | ambiguous | -2.585 | Highly Destabilizing | 0.782 | D | 0.679 | prob.neutral | N | 0.482307016 | None | None | N |
A/E | 0.3519 | ambiguous | 0.3067 | benign | -2.428 | Highly Destabilizing | 0.826 | D | 0.675 | prob.neutral | None | None | None | None | N |
A/F | 0.3018 | likely_benign | 0.2457 | benign | -0.785 | Destabilizing | 0.906 | D | 0.745 | deleterious | None | None | None | None | N |
A/G | 0.099 | likely_benign | 0.1022 | benign | -1.51 | Destabilizing | 0.003 | N | 0.493 | neutral | N | 0.475960176 | None | None | N |
A/H | 0.4877 | ambiguous | 0.4446 | ambiguous | -2.108 | Highly Destabilizing | 0.991 | D | 0.732 | prob.delet. | None | None | None | None | N |
A/I | 0.2251 | likely_benign | 0.169 | benign | 0.041 | Stabilizing | 0.704 | D | 0.675 | neutral | None | None | None | None | N |
A/K | 0.5778 | likely_pathogenic | 0.5086 | ambiguous | -1.362 | Destabilizing | 0.826 | D | 0.676 | prob.neutral | None | None | None | None | N |
A/L | 0.1649 | likely_benign | 0.1353 | benign | 0.041 | Stabilizing | 0.404 | N | 0.61 | neutral | None | None | None | None | N |
A/M | 0.2048 | likely_benign | 0.1643 | benign | -0.052 | Destabilizing | 0.973 | D | 0.696 | prob.neutral | None | None | None | None | N |
A/N | 0.2706 | likely_benign | 0.2234 | benign | -1.56 | Destabilizing | 0.826 | D | 0.687 | prob.neutral | None | None | None | None | N |
A/P | 0.884 | likely_pathogenic | 0.8613 | pathogenic | -0.293 | Destabilizing | 0.879 | D | 0.695 | prob.neutral | N | 0.498462715 | None | None | N |
A/Q | 0.3526 | ambiguous | 0.323 | benign | -1.419 | Destabilizing | 0.906 | D | 0.708 | prob.delet. | None | None | None | None | N |
A/R | 0.5026 | ambiguous | 0.4463 | ambiguous | -1.36 | Destabilizing | 0.826 | D | 0.693 | prob.neutral | None | None | None | None | N |
A/S | 0.0821 | likely_benign | 0.079 | benign | -1.869 | Destabilizing | 0.038 | N | 0.481 | neutral | N | 0.414655427 | None | None | N |
A/T | 0.084 | likely_benign | 0.0765 | benign | -1.613 | Destabilizing | 0.007 | N | 0.456 | neutral | N | 0.473879876 | None | None | N |
A/V | 0.136 | likely_benign | 0.1088 | benign | -0.293 | Destabilizing | 0.007 | N | 0.437 | neutral | N | 0.519847026 | None | None | N |
A/W | 0.7128 | likely_pathogenic | 0.6829 | pathogenic | -1.645 | Destabilizing | 0.991 | D | 0.789 | deleterious | None | None | None | None | N |
A/Y | 0.4276 | ambiguous | 0.3834 | ambiguous | -1.094 | Destabilizing | 0.906 | D | 0.747 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.