Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 26619 | 80080;80081;80082 | chr2:178566277;178566276;178566275 | chr2:179431004;179431003;179431002 |
N2AB | 24978 | 75157;75158;75159 | chr2:178566277;178566276;178566275 | chr2:179431004;179431003;179431002 |
N2A | 24051 | 72376;72377;72378 | chr2:178566277;178566276;178566275 | chr2:179431004;179431003;179431002 |
N2B | 17554 | 52885;52886;52887 | chr2:178566277;178566276;178566275 | chr2:179431004;179431003;179431002 |
Novex-1 | 17679 | 53260;53261;53262 | chr2:178566277;178566276;178566275 | chr2:179431004;179431003;179431002 |
Novex-2 | 17746 | 53461;53462;53463 | chr2:178566277;178566276;178566275 | chr2:179431004;179431003;179431002 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs757229467 | -0.088 | 0.047 | N | 0.537 | 0.338 | 0.499727662827 | gnomAD-2.1.1 | 3.62E-05 | None | None | None | None | N | None | 0 | 5.8E-05 | None | 0 | 1.11408E-04 | None | 3.27E-05 | None | 0 | 3.55E-05 | 0 |
R/C | rs757229467 | -0.088 | 0.047 | N | 0.537 | 0.338 | 0.499727662827 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | N | None | 0 | 6.56E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 4.77555E-04 |
R/C | rs757229467 | -0.088 | 0.047 | N | 0.537 | 0.338 | 0.499727662827 | gnomAD-4.0.0 | 1.23958E-05 | None | None | None | None | N | None | 0 | 5.00417E-05 | None | 0 | 4.4603E-05 | None | 0 | 0 | 9.32439E-06 | 1.09801E-05 | 4.80384E-05 |
R/H | rs530507211 | -0.82 | 0.047 | D | 0.291 | 0.235 | 0.202086224978 | gnomAD-2.1.1 | 3.25466E-04 | None | None | None | None | N | None | 0 | 2.11496E-03 | None | 0 | 5.57E-05 | None | 1.3071E-04 | None | 0 | 2.66E-05 | 0 |
R/H | rs530507211 | -0.82 | 0.047 | D | 0.291 | 0.235 | 0.202086224978 | gnomAD-3.1.2 | 3.95E-05 | None | None | None | None | N | None | 0 | 2.62398E-04 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
R/H | rs530507211 | -0.82 | 0.047 | D | 0.291 | 0.235 | 0.202086224978 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
R/H | rs530507211 | -0.82 | 0.047 | D | 0.291 | 0.235 | 0.202086224978 | gnomAD-4.0.0 | 6.631E-05 | None | None | None | None | N | None | 1.33323E-05 | 1.31715E-03 | None | 6.75721E-05 | 2.23025E-05 | None | 0 | 0 | 9.32448E-06 | 1.20778E-04 | 3.20164E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.9719 | likely_pathogenic | 0.968 | pathogenic | 0.071 | Stabilizing | 0.25 | N | 0.498 | neutral | None | None | None | None | N |
R/C | 0.4947 | ambiguous | 0.4658 | ambiguous | -0.075 | Destabilizing | 0.047 | N | 0.537 | neutral | N | 0.515179797 | None | None | N |
R/D | 0.9918 | likely_pathogenic | 0.9921 | pathogenic | -0.222 | Destabilizing | 0.92 | D | 0.556 | neutral | None | None | None | None | N |
R/E | 0.9411 | likely_pathogenic | 0.9427 | pathogenic | -0.175 | Destabilizing | 0.617 | D | 0.436 | neutral | None | None | None | None | N |
R/F | 0.8806 | likely_pathogenic | 0.8645 | pathogenic | -0.198 | Destabilizing | 0.85 | D | 0.552 | neutral | None | None | None | None | N |
R/G | 0.9567 | likely_pathogenic | 0.9523 | pathogenic | -0.091 | Destabilizing | 0.756 | D | 0.583 | neutral | N | 0.521674257 | None | None | N |
R/H | 0.2748 | likely_benign | 0.2546 | benign | -0.612 | Destabilizing | 0.047 | N | 0.291 | neutral | D | 0.528517729 | None | None | N |
R/I | 0.7327 | likely_pathogenic | 0.6885 | pathogenic | 0.454 | Stabilizing | 0.447 | N | 0.556 | neutral | None | None | None | None | N |
R/K | 0.278 | likely_benign | 0.2594 | benign | -0.038 | Destabilizing | 0.766 | D | 0.413 | neutral | None | None | None | None | N |
R/L | 0.8042 | likely_pathogenic | 0.7677 | pathogenic | 0.454 | Stabilizing | 0.608 | D | 0.548 | neutral | N | 0.503063023 | None | None | N |
R/M | 0.8434 | likely_pathogenic | 0.816 | pathogenic | 0.037 | Stabilizing | 0.92 | D | 0.494 | neutral | None | None | None | None | N |
R/N | 0.9579 | likely_pathogenic | 0.96 | pathogenic | 0.154 | Stabilizing | 0.617 | D | 0.45 | neutral | None | None | None | None | N |
R/P | 0.9973 | likely_pathogenic | 0.9972 | pathogenic | 0.345 | Stabilizing | 0.985 | D | 0.572 | neutral | D | 0.533284052 | None | None | N |
R/Q | 0.3695 | ambiguous | 0.355 | ambiguous | 0.077 | Stabilizing | 0.92 | D | 0.48 | neutral | None | None | None | None | N |
R/S | 0.9662 | likely_pathogenic | 0.9635 | pathogenic | -0.073 | Destabilizing | 0.756 | D | 0.529 | neutral | D | 0.522647762 | None | None | N |
R/T | 0.9299 | likely_pathogenic | 0.9183 | pathogenic | 0.087 | Stabilizing | 0.617 | D | 0.526 | neutral | None | None | None | None | N |
R/V | 0.8542 | likely_pathogenic | 0.8244 | pathogenic | 0.345 | Stabilizing | 0.005 | N | 0.44 | neutral | None | None | None | None | N |
R/W | 0.4765 | ambiguous | 0.4507 | ambiguous | -0.336 | Destabilizing | 0.992 | D | 0.599 | neutral | None | None | None | None | N |
R/Y | 0.7012 | likely_pathogenic | 0.696 | pathogenic | 0.07 | Stabilizing | 0.85 | D | 0.567 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.