Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 26852 | 80779;80780;80781 | chr2:178565578;178565577;178565576 | chr2:179430305;179430304;179430303 |
N2AB | 25211 | 75856;75857;75858 | chr2:178565578;178565577;178565576 | chr2:179430305;179430304;179430303 |
N2A | 24284 | 73075;73076;73077 | chr2:178565578;178565577;178565576 | chr2:179430305;179430304;179430303 |
N2B | 17787 | 53584;53585;53586 | chr2:178565578;178565577;178565576 | chr2:179430305;179430304;179430303 |
Novex-1 | 17912 | 53959;53960;53961 | chr2:178565578;178565577;178565576 | chr2:179430305;179430304;179430303 |
Novex-2 | 17979 | 54160;54161;54162 | chr2:178565578;178565577;178565576 | chr2:179430305;179430304;179430303 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs185887755 | -1.452 | 1.0 | D | 0.765 | 0.533 | None | gnomAD-2.1.1 | 4.42472E-04 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.27934E-03 | None | 5.88312E-04 | None | 0 | 2.34E-05 | 0 |
R/C | rs185887755 | -1.452 | 1.0 | D | 0.765 | 0.533 | None | gnomAD-3.1.2 | 1.71023E-04 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 4.07292E-03 | None | 0 | 0 | 1.47E-05 | 8.285E-04 | 0 |
R/C | rs185887755 | -1.452 | 1.0 | D | 0.765 | 0.533 | None | 1000 genomes | 5.99042E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 3E-03 | 0 | None | None | None | 0 | None |
R/C | rs185887755 | -1.452 | 1.0 | D | 0.765 | 0.533 | None | gnomAD-4.0.0 | 1.63618E-04 | None | None | None | None | N | None | 1.33351E-05 | 1.66717E-05 | None | 0 | 4.39399E-03 | None | 0 | 0 | 1.01729E-05 | 5.05117E-04 | 1.12065E-04 |
R/H | rs202149931 | -2.006 | 0.261 | D | 0.462 | 0.284 | None | gnomAD-2.1.1 | 9.99E-05 | None | None | None | None | N | None | 5.78847E-04 | 5.66E-05 | None | 0 | 5.13E-05 | None | 0 | None | 0 | 7.8E-05 | 1.40331E-04 |
R/H | rs202149931 | -2.006 | 0.261 | D | 0.462 | 0.284 | None | gnomAD-3.1.2 | 1.77533E-04 | None | None | None | None | N | None | 5.06928E-04 | 0 | 0 | 0 | 0 | None | 0 | 0 | 8.82E-05 | 0 | 0 |
R/H | rs202149931 | -2.006 | 0.261 | D | 0.462 | 0.284 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
R/H | rs202149931 | -2.006 | 0.261 | D | 0.462 | 0.284 | None | gnomAD-4.0.0 | 8.3664E-05 | None | None | None | None | N | None | 5.73318E-04 | 3.33367E-05 | None | 0 | 2.23015E-05 | None | 0 | 0 | 6.86654E-05 | 2.19592E-05 | 9.60523E-05 |
R/L | None | None | 0.957 | N | 0.555 | 0.403 | 0.429552544315 | gnomAD-4.0.0 | 6.84277E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.15942E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.7998 | likely_pathogenic | 0.5693 | pathogenic | -1.633 | Destabilizing | 0.933 | D | 0.529 | neutral | None | None | None | None | N |
R/C | 0.2775 | likely_benign | 0.1147 | benign | -1.567 | Destabilizing | 1.0 | D | 0.765 | deleterious | D | 0.536791728 | None | None | N |
R/D | 0.9879 | likely_pathogenic | 0.9636 | pathogenic | -0.912 | Destabilizing | 0.99 | D | 0.603 | neutral | None | None | None | None | N |
R/E | 0.8446 | likely_pathogenic | 0.6971 | pathogenic | -0.701 | Destabilizing | 0.806 | D | 0.517 | neutral | None | None | None | None | N |
R/F | 0.9114 | likely_pathogenic | 0.7276 | pathogenic | -0.756 | Destabilizing | 0.987 | D | 0.745 | deleterious | None | None | None | None | N |
R/G | 0.8418 | likely_pathogenic | 0.6038 | pathogenic | -1.962 | Destabilizing | 0.982 | D | 0.534 | neutral | D | 0.554642493 | None | None | N |
R/H | 0.2714 | likely_benign | 0.1556 | benign | -1.845 | Destabilizing | 0.261 | N | 0.462 | neutral | D | 0.532018788 | None | None | N |
R/I | 0.7227 | likely_pathogenic | 0.4476 | ambiguous | -0.681 | Destabilizing | 0.988 | D | 0.739 | prob.delet. | None | None | None | None | N |
R/K | 0.4215 | ambiguous | 0.2602 | benign | -1.074 | Destabilizing | 0.406 | N | 0.573 | neutral | None | None | None | None | N |
R/L | 0.6611 | likely_pathogenic | 0.3952 | ambiguous | -0.681 | Destabilizing | 0.957 | D | 0.555 | neutral | N | 0.513914533 | None | None | N |
R/M | 0.7382 | likely_pathogenic | 0.48 | ambiguous | -1.259 | Destabilizing | 0.997 | D | 0.649 | neutral | None | None | None | None | N |
R/N | 0.9411 | likely_pathogenic | 0.8299 | pathogenic | -1.149 | Destabilizing | 0.965 | D | 0.475 | neutral | None | None | None | None | N |
R/P | 0.9969 | likely_pathogenic | 0.9941 | pathogenic | -0.988 | Destabilizing | 0.997 | D | 0.667 | neutral | D | 0.555149472 | None | None | N |
R/Q | 0.178 | likely_benign | 0.1067 | benign | -0.924 | Destabilizing | 0.388 | N | 0.489 | neutral | None | None | None | None | N |
R/S | 0.8649 | likely_pathogenic | 0.6482 | pathogenic | -1.881 | Destabilizing | 0.964 | D | 0.506 | neutral | N | 0.510365679 | None | None | N |
R/T | 0.7914 | likely_pathogenic | 0.5408 | ambiguous | -1.476 | Destabilizing | 0.965 | D | 0.537 | neutral | None | None | None | None | N |
R/V | 0.7702 | likely_pathogenic | 0.5183 | ambiguous | -0.988 | Destabilizing | 0.967 | D | 0.67 | neutral | None | None | None | None | N |
R/W | 0.54 | ambiguous | 0.3595 | ambiguous | -0.413 | Destabilizing | 1.0 | D | 0.755 | deleterious | None | None | None | None | N |
R/Y | 0.8001 | likely_pathogenic | 0.5503 | ambiguous | -0.247 | Destabilizing | 0.975 | D | 0.667 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.