Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 26995 | 81208;81209;81210 | chr2:178565149;178565148;178565147 | chr2:179429876;179429875;179429874 |
N2AB | 25354 | 76285;76286;76287 | chr2:178565149;178565148;178565147 | chr2:179429876;179429875;179429874 |
N2A | 24427 | 73504;73505;73506 | chr2:178565149;178565148;178565147 | chr2:179429876;179429875;179429874 |
N2B | 17930 | 54013;54014;54015 | chr2:178565149;178565148;178565147 | chr2:179429876;179429875;179429874 |
Novex-1 | 18055 | 54388;54389;54390 | chr2:178565149;178565148;178565147 | chr2:179429876;179429875;179429874 |
Novex-2 | 18122 | 54589;54590;54591 | chr2:178565149;178565148;178565147 | chr2:179429876;179429875;179429874 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
E/K | rs397517719 | -0.368 | 0.007 | N | 0.242 | 0.178 | None | gnomAD-2.1.1 | 2.25553E-04 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 1.50721E-03 | None | 0 | 1.33285E-04 | 0 |
E/K | rs397517719 | -0.368 | 0.007 | N | 0.242 | 0.178 | None | gnomAD-3.1.2 | 1.31513E-04 | None | None | None | None | N | None | 2.41E-05 | 6.56E-05 | 0 | 0 | 0 | None | 0 | 0 | 2.05858E-04 | 8.285E-04 | 0 |
E/K | rs397517719 | -0.368 | 0.007 | N | 0.242 | 0.178 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 1E-03 | None |
E/K | rs397517719 | -0.368 | 0.007 | N | 0.242 | 0.178 | None | gnomAD-4.0.0 | 1.98983E-04 | None | None | None | None | N | None | 1.33394E-05 | 1.66828E-05 | None | 0 | 0 | None | 3.12607E-05 | 0 | 1.44974E-04 | 1.51688E-03 | 1.28082E-04 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
E/A | 0.1377 | likely_benign | 0.1238 | benign | -0.947 | Destabilizing | 0.684 | D | 0.559 | neutral | N | 0.508939386 | None | None | N |
E/C | 0.774 | likely_pathogenic | 0.7365 | pathogenic | -0.486 | Destabilizing | 0.996 | D | 0.641 | neutral | None | None | None | None | N |
E/D | 0.0848 | likely_benign | 0.074 | benign | -1.04 | Destabilizing | 0.003 | N | 0.205 | neutral | N | 0.452854029 | None | None | N |
E/F | 0.6854 | likely_pathogenic | 0.6266 | pathogenic | -0.445 | Destabilizing | 0.984 | D | 0.625 | neutral | None | None | None | None | N |
E/G | 0.1327 | likely_benign | 0.1216 | benign | -1.291 | Destabilizing | 0.684 | D | 0.598 | neutral | N | 0.469726624 | None | None | N |
E/H | 0.4134 | ambiguous | 0.3897 | ambiguous | -0.642 | Destabilizing | 0.953 | D | 0.555 | neutral | None | None | None | None | N |
E/I | 0.3532 | ambiguous | 0.3065 | benign | -0.011 | Destabilizing | 0.953 | D | 0.639 | neutral | None | None | None | None | N |
E/K | 0.1684 | likely_benign | 0.1602 | benign | -0.641 | Destabilizing | 0.007 | N | 0.242 | neutral | N | 0.476864253 | None | None | N |
E/L | 0.2895 | likely_benign | 0.2434 | benign | -0.011 | Destabilizing | 0.742 | D | 0.645 | neutral | None | None | None | None | N |
E/M | 0.3848 | ambiguous | 0.3397 | benign | 0.412 | Stabilizing | 0.987 | D | 0.615 | neutral | None | None | None | None | N |
E/N | 0.1368 | likely_benign | 0.1193 | benign | -1.073 | Destabilizing | 0.59 | D | 0.547 | neutral | None | None | None | None | N |
E/P | 0.782 | likely_pathogenic | 0.7313 | pathogenic | -0.302 | Destabilizing | 0.953 | D | 0.636 | neutral | None | None | None | None | N |
E/Q | 0.129 | likely_benign | 0.1197 | benign | -0.959 | Destabilizing | 0.028 | N | 0.327 | neutral | N | 0.458241206 | None | None | N |
E/R | 0.2983 | likely_benign | 0.2949 | benign | -0.326 | Destabilizing | 0.59 | D | 0.559 | neutral | None | None | None | None | N |
E/S | 0.1535 | likely_benign | 0.1357 | benign | -1.368 | Destabilizing | 0.742 | D | 0.543 | neutral | None | None | None | None | N |
E/T | 0.2247 | likely_benign | 0.1956 | benign | -1.088 | Destabilizing | 0.742 | D | 0.587 | neutral | None | None | None | None | N |
E/V | 0.2228 | likely_benign | 0.1942 | benign | -0.302 | Destabilizing | 0.884 | D | 0.649 | neutral | N | 0.474246075 | None | None | N |
E/W | 0.8983 | likely_pathogenic | 0.8796 | pathogenic | -0.185 | Destabilizing | 0.996 | D | 0.667 | neutral | None | None | None | None | N |
E/Y | 0.5209 | ambiguous | 0.4682 | ambiguous | -0.199 | Destabilizing | 0.984 | D | 0.631 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.