Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 27298 | 82117;82118;82119 | chr2:178564240;178564239;178564238 | chr2:179428967;179428966;179428965 |
N2AB | 25657 | 77194;77195;77196 | chr2:178564240;178564239;178564238 | chr2:179428967;179428966;179428965 |
N2A | 24730 | 74413;74414;74415 | chr2:178564240;178564239;178564238 | chr2:179428967;179428966;179428965 |
N2B | 18233 | 54922;54923;54924 | chr2:178564240;178564239;178564238 | chr2:179428967;179428966;179428965 |
Novex-1 | 18358 | 55297;55298;55299 | chr2:178564240;178564239;178564238 | chr2:179428967;179428966;179428965 |
Novex-2 | 18425 | 55498;55499;55500 | chr2:178564240;178564239;178564238 | chr2:179428967;179428966;179428965 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/A | rs557375464 | -0.445 | 1.0 | N | 0.753 | 0.479 | 0.52991035303 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
D/A | rs557375464 | -0.445 | 1.0 | N | 0.753 | 0.479 | 0.52991035303 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 2.06782E-04 | 0 |
D/A | rs557375464 | -0.445 | 1.0 | N | 0.753 | 0.479 | 0.52991035303 | 1000 genomes | 1.99681E-04 | None | None | None | None | I | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 1E-03 | None |
D/A | rs557375464 | -0.445 | 1.0 | N | 0.753 | 0.479 | 0.52991035303 | gnomAD-4.0.0 | 6.56737E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 2.06954E-04 | 0 |
D/G | None | None | 1.0 | D | 0.762 | 0.518 | 0.473378105536 | gnomAD-4.0.0 | 1.59237E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.43271E-05 | 0 |
D/N | rs200697681 | -0.832 | 1.0 | D | 0.673 | 0.411 | None | gnomAD-2.1.1 | 2.79264E-04 | None | None | None | None | I | None | 8.27E-05 | 1.18792E-03 | None | 0 | 0 | None | 0 | None | 0 | 2.43084E-04 | 4.21585E-04 |
D/N | rs200697681 | -0.832 | 1.0 | D | 0.673 | 0.411 | None | gnomAD-3.1.2 | 1.64344E-04 | None | None | None | None | I | None | 9.65E-05 | 3.93339E-04 | 0 | 5.77367E-04 | 0 | None | 0 | 0 | 1.76419E-04 | 2.07125E-04 | 0 |
D/N | rs200697681 | -0.832 | 1.0 | D | 0.673 | 0.411 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | I | None | 0 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
D/N | rs200697681 | -0.832 | 1.0 | D | 0.673 | 0.411 | None | gnomAD-4.0.0 | 1.59925E-04 | None | None | None | None | I | None | 7.99659E-05 | 8.66753E-04 | None | 6.75813E-05 | 2.22916E-05 | None | 0 | 0 | 1.57657E-04 | 1.09796E-05 | 1.60056E-04 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/A | 0.215 | likely_benign | 0.2541 | benign | -0.294 | Destabilizing | 1.0 | D | 0.753 | deleterious | N | 0.488324545 | None | None | I |
D/C | 0.692 | likely_pathogenic | 0.7416 | pathogenic | -0.14 | Destabilizing | 1.0 | D | 0.76 | deleterious | None | None | None | None | I |
D/E | 0.276 | likely_benign | 0.308 | benign | -0.381 | Destabilizing | 1.0 | D | 0.453 | neutral | N | 0.499040184 | None | None | I |
D/F | 0.6298 | likely_pathogenic | 0.6587 | pathogenic | -0.126 | Destabilizing | 1.0 | D | 0.781 | deleterious | None | None | None | None | I |
D/G | 0.2583 | likely_benign | 0.297 | benign | -0.525 | Destabilizing | 1.0 | D | 0.762 | deleterious | D | 0.529672522 | None | None | I |
D/H | 0.3646 | ambiguous | 0.4093 | ambiguous | -0.041 | Destabilizing | 1.0 | D | 0.749 | deleterious | N | 0.51666594 | None | None | I |
D/I | 0.4168 | ambiguous | 0.4552 | ambiguous | 0.273 | Stabilizing | 1.0 | D | 0.787 | deleterious | None | None | None | None | I |
D/K | 0.5564 | ambiguous | 0.6149 | pathogenic | 0.03 | Stabilizing | 1.0 | D | 0.787 | deleterious | None | None | None | None | I |
D/L | 0.4763 | ambiguous | 0.5265 | ambiguous | 0.273 | Stabilizing | 1.0 | D | 0.791 | deleterious | None | None | None | None | I |
D/M | 0.6558 | likely_pathogenic | 0.6914 | pathogenic | 0.341 | Stabilizing | 1.0 | D | 0.762 | deleterious | None | None | None | None | I |
D/N | 0.1183 | likely_benign | 0.1268 | benign | -0.237 | Destabilizing | 1.0 | D | 0.673 | neutral | D | 0.528632372 | None | None | I |
D/P | 0.912 | likely_pathogenic | 0.9272 | pathogenic | 0.107 | Stabilizing | 1.0 | D | 0.784 | deleterious | None | None | None | None | I |
D/Q | 0.4902 | ambiguous | 0.5477 | ambiguous | -0.189 | Destabilizing | 1.0 | D | 0.703 | prob.neutral | None | None | None | None | I |
D/R | 0.566 | likely_pathogenic | 0.6174 | pathogenic | 0.271 | Stabilizing | 1.0 | D | 0.779 | deleterious | None | None | None | None | I |
D/S | 0.1774 | likely_benign | 0.1889 | benign | -0.383 | Destabilizing | 1.0 | D | 0.683 | prob.neutral | None | None | None | None | I |
D/T | 0.3253 | likely_benign | 0.3631 | ambiguous | -0.209 | Destabilizing | 1.0 | D | 0.794 | deleterious | None | None | None | None | I |
D/V | 0.2551 | likely_benign | 0.2878 | benign | 0.107 | Stabilizing | 1.0 | D | 0.787 | deleterious | N | 0.497618819 | None | None | I |
D/W | 0.9067 | likely_pathogenic | 0.917 | pathogenic | 0.011 | Stabilizing | 1.0 | D | 0.751 | deleterious | None | None | None | None | I |
D/Y | 0.2703 | likely_benign | 0.3026 | benign | 0.101 | Stabilizing | 1.0 | D | 0.769 | deleterious | N | 0.498899194 | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.