Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 27456 | 82591;82592;82593 | chr2:178563766;178563765;178563764 | chr2:179428493;179428492;179428491 |
N2AB | 25815 | 77668;77669;77670 | chr2:178563766;178563765;178563764 | chr2:179428493;179428492;179428491 |
N2A | 24888 | 74887;74888;74889 | chr2:178563766;178563765;178563764 | chr2:179428493;179428492;179428491 |
N2B | 18391 | 55396;55397;55398 | chr2:178563766;178563765;178563764 | chr2:179428493;179428492;179428491 |
Novex-1 | 18516 | 55771;55772;55773 | chr2:178563766;178563765;178563764 | chr2:179428493;179428492;179428491 |
Novex-2 | 18583 | 55972;55973;55974 | chr2:178563766;178563765;178563764 | chr2:179428493;179428492;179428491 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs1233877374 | None | 0.994 | N | 0.679 | 0.255 | 0.489311470972 | gnomAD-4.0.0 | 1.36846E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.79897E-06 | 0 | 0 |
L/M | None | None | 0.983 | N | 0.701 | 0.268 | 0.365509141856 | gnomAD-4.0.0 | 1.36846E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.79897E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.3658 | ambiguous | 0.3929 | ambiguous | -2.397 | Highly Destabilizing | 0.128 | N | 0.476 | neutral | None | None | None | None | N |
L/C | 0.5456 | ambiguous | 0.5579 | ambiguous | -1.675 | Destabilizing | 0.999 | D | 0.719 | prob.delet. | None | None | None | None | N |
L/D | 0.9737 | likely_pathogenic | 0.9746 | pathogenic | -2.614 | Highly Destabilizing | 0.975 | D | 0.763 | deleterious | None | None | None | None | N |
L/E | 0.7493 | likely_pathogenic | 0.7696 | pathogenic | -2.443 | Highly Destabilizing | 0.95 | D | 0.72 | prob.delet. | None | None | None | None | N |
L/F | 0.5207 | ambiguous | 0.5711 | pathogenic | -1.413 | Destabilizing | 0.994 | D | 0.679 | prob.neutral | N | 0.516421477 | None | None | N |
L/G | 0.8198 | likely_pathogenic | 0.818 | pathogenic | -2.878 | Highly Destabilizing | 0.975 | D | 0.716 | prob.delet. | None | None | None | None | N |
L/H | 0.7194 | likely_pathogenic | 0.7425 | pathogenic | -2.283 | Highly Destabilizing | 0.997 | D | 0.795 | deleterious | None | None | None | None | N |
L/I | 0.1279 | likely_benign | 0.1461 | benign | -1.034 | Destabilizing | 0.957 | D | 0.644 | neutral | None | None | None | None | N |
L/K | 0.6607 | likely_pathogenic | 0.671 | pathogenic | -1.792 | Destabilizing | 0.95 | D | 0.667 | neutral | None | None | None | None | N |
L/M | 0.181 | likely_benign | 0.2007 | benign | -1.037 | Destabilizing | 0.983 | D | 0.701 | prob.neutral | N | 0.516674966 | None | None | N |
L/N | 0.8598 | likely_pathogenic | 0.864 | pathogenic | -1.974 | Destabilizing | 0.975 | D | 0.799 | deleterious | None | None | None | None | N |
L/P | 0.9824 | likely_pathogenic | 0.9821 | pathogenic | -1.467 | Destabilizing | 0.987 | D | 0.799 | deleterious | None | None | None | None | N |
L/Q | 0.4031 | ambiguous | 0.418 | ambiguous | -1.933 | Destabilizing | 0.253 | N | 0.527 | neutral | None | None | None | None | N |
L/R | 0.4873 | ambiguous | 0.5021 | ambiguous | -1.421 | Destabilizing | 0.95 | D | 0.706 | prob.neutral | None | None | None | None | N |
L/S | 0.5955 | likely_pathogenic | 0.6244 | pathogenic | -2.628 | Highly Destabilizing | 0.805 | D | 0.643 | neutral | N | 0.471925675 | None | None | N |
L/T | 0.3544 | ambiguous | 0.3772 | ambiguous | -2.331 | Highly Destabilizing | 0.916 | D | 0.664 | neutral | None | None | None | None | N |
L/V | 0.1164 | likely_benign | 0.13 | benign | -1.467 | Destabilizing | 0.892 | D | 0.613 | neutral | N | 0.517206578 | None | None | N |
L/W | 0.7836 | likely_pathogenic | 0.8189 | pathogenic | -1.751 | Destabilizing | 0.999 | D | 0.731 | prob.delet. | N | 0.516928456 | None | None | N |
L/Y | 0.8273 | likely_pathogenic | 0.8445 | pathogenic | -1.475 | Destabilizing | 0.996 | D | 0.735 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.