Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 27563 | 82912;82913;82914 | chr2:178563445;178563444;178563443 | chr2:179428172;179428171;179428170 |
N2AB | 25922 | 77989;77990;77991 | chr2:178563445;178563444;178563443 | chr2:179428172;179428171;179428170 |
N2A | 24995 | 75208;75209;75210 | chr2:178563445;178563444;178563443 | chr2:179428172;179428171;179428170 |
N2B | 18498 | 55717;55718;55719 | chr2:178563445;178563444;178563443 | chr2:179428172;179428171;179428170 |
Novex-1 | 18623 | 56092;56093;56094 | chr2:178563445;178563444;178563443 | chr2:179428172;179428171;179428170 |
Novex-2 | 18690 | 56293;56294;56295 | chr2:178563445;178563444;178563443 | chr2:179428172;179428171;179428170 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs72648214 | -0.406 | 0.991 | N | 0.39 | 0.371 | 0.534239989213 | gnomAD-2.1.1 | 3.22E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 1.11995E-04 | None | 0 | None | 0 | 5.34E-05 | 0 |
R/C | rs72648214 | -0.406 | 0.991 | N | 0.39 | 0.371 | 0.534239989213 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
R/C | rs72648214 | -0.406 | 0.991 | N | 0.39 | 0.371 | 0.534239989213 | gnomAD-4.0.0 | 1.23962E-05 | None | None | None | None | N | None | 1.33622E-05 | 0 | None | 0 | 8.93256E-05 | None | 0 | 1.64474E-04 | 1.10195E-05 | 1.09791E-05 | 0 |
R/H | rs118079537 | -1.001 | 0.01 | N | 0.234 | 0.1 | None | gnomAD-2.1.1 | 2.50275E-04 | None | None | None | None | N | None | 0 | 1.13231E-04 | None | 0 | 3.14077E-03 | None | 6.54E-05 | None | 0 | 2.35E-05 | 0 |
R/H | rs118079537 | -1.001 | 0.01 | N | 0.234 | 0.1 | None | gnomAD-3.1.2 | 1.31574E-04 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 3.48702E-03 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
R/H | rs118079537 | -1.001 | 0.01 | N | 0.234 | 0.1 | None | 1000 genomes | 5.99042E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 3E-03 | 0 | None | None | None | 0 | None |
R/H | rs118079537 | -1.001 | 0.01 | N | 0.234 | 0.1 | None | gnomAD-4.0.0 | 6.75517E-05 | None | None | None | None | N | None | 0 | 5.00367E-05 | None | 0 | 1.69726E-03 | None | 0 | 0 | 2.2039E-05 | 2.19587E-05 | 3.20123E-05 |
R/S | rs72648214 | None | 0.208 | N | 0.406 | 0.241 | 0.253205268125 | gnomAD-4.0.0 | 6.84261E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99489E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.3029 | likely_benign | 0.3639 | ambiguous | -0.312 | Destabilizing | 0.064 | N | 0.419 | neutral | None | None | None | None | N |
R/C | 0.1473 | likely_benign | 0.1624 | benign | -0.331 | Destabilizing | 0.991 | D | 0.39 | neutral | N | 0.518092013 | None | None | N |
R/D | 0.6131 | likely_pathogenic | 0.6788 | pathogenic | -0.169 | Destabilizing | 0.25 | N | 0.424 | neutral | None | None | None | None | N |
R/E | 0.302 | likely_benign | 0.3615 | ambiguous | -0.123 | Destabilizing | 0.121 | N | 0.367 | neutral | None | None | None | None | N |
R/F | 0.4456 | ambiguous | 0.4995 | ambiguous | -0.591 | Destabilizing | 0.703 | D | 0.429 | neutral | None | None | None | None | N |
R/G | 0.2555 | likely_benign | 0.299 | benign | -0.493 | Destabilizing | 0.001 | N | 0.305 | neutral | N | 0.473451791 | None | None | N |
R/H | 0.0897 | likely_benign | 0.0969 | benign | -0.873 | Destabilizing | 0.01 | N | 0.234 | neutral | N | 0.508760454 | None | None | N |
R/I | 0.2009 | likely_benign | 0.2237 | benign | 0.128 | Stabilizing | 0.703 | D | 0.447 | neutral | None | None | None | None | N |
R/K | 0.0841 | likely_benign | 0.0993 | benign | -0.315 | Destabilizing | 0.001 | N | 0.123 | neutral | None | None | None | None | N |
R/L | 0.1678 | likely_benign | 0.1964 | benign | 0.128 | Stabilizing | 0.389 | N | 0.442 | neutral | N | 0.423872343 | None | None | N |
R/M | 0.2095 | likely_benign | 0.2426 | benign | -0.068 | Destabilizing | 0.878 | D | 0.456 | neutral | None | None | None | None | N |
R/N | 0.4963 | ambiguous | 0.5704 | pathogenic | 0.055 | Stabilizing | 0.143 | N | 0.387 | neutral | None | None | None | None | N |
R/P | 0.459 | ambiguous | 0.5148 | ambiguous | 0.001 | Stabilizing | 0.932 | D | 0.478 | neutral | N | 0.461677412 | None | None | N |
R/Q | 0.0927 | likely_benign | 0.1002 | benign | -0.166 | Destabilizing | 0.25 | N | 0.463 | neutral | None | None | None | None | N |
R/S | 0.3759 | ambiguous | 0.4484 | ambiguous | -0.428 | Destabilizing | 0.208 | N | 0.406 | neutral | N | 0.48174721 | None | None | N |
R/T | 0.1508 | likely_benign | 0.1891 | benign | -0.257 | Destabilizing | 0.403 | N | 0.42 | neutral | None | None | None | None | N |
R/V | 0.2346 | likely_benign | 0.2774 | benign | 0.001 | Stabilizing | 0.403 | N | 0.491 | neutral | None | None | None | None | N |
R/W | 0.1528 | likely_benign | 0.1656 | benign | -0.552 | Destabilizing | 0.964 | D | 0.413 | neutral | None | None | None | None | N |
R/Y | 0.3099 | likely_benign | 0.3441 | ambiguous | -0.166 | Destabilizing | 0.369 | N | 0.461 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.