Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 27796 | 83611;83612;83613 | chr2:178562746;178562745;178562744 | chr2:179427473;179427472;179427471 |
N2AB | 26155 | 78688;78689;78690 | chr2:178562746;178562745;178562744 | chr2:179427473;179427472;179427471 |
N2A | 25228 | 75907;75908;75909 | chr2:178562746;178562745;178562744 | chr2:179427473;179427472;179427471 |
N2B | 18731 | 56416;56417;56418 | chr2:178562746;178562745;178562744 | chr2:179427473;179427472;179427471 |
Novex-1 | 18856 | 56791;56792;56793 | chr2:178562746;178562745;178562744 | chr2:179427473;179427472;179427471 |
Novex-2 | 18923 | 56992;56993;56994 | chr2:178562746;178562745;178562744 | chr2:179427473;179427472;179427471 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/G | rs368241592 | -1.417 | 0.919 | N | 0.6 | 0.357 | 0.355450299083 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.91E-06 | 0 |
A/G | rs368241592 | -1.417 | 0.919 | N | 0.6 | 0.357 | 0.355450299083 | gnomAD-4.0.0 | 6.85141E-07 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 9.00325E-07 | 0 | 0 |
A/T | rs780507493 | -1.154 | 0.919 | N | 0.673 | 0.201 | 0.342631996419 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.91E-06 | 0 |
A/T | rs780507493 | -1.154 | 0.919 | N | 0.673 | 0.201 | 0.342631996419 | gnomAD-4.0.0 | 6.38439E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 1.88558E-05 | 0 | 8.59949E-06 | 0 | 0 |
A/V | rs368241592 | -0.615 | 0.958 | N | 0.749 | 0.367 | None | gnomAD-2.1.1 | 2.02E-05 | None | None | None | None | I | None | 6.48E-05 | 0 | None | 0 | 0 | None | 1.31484E-04 | None | 0 | 0 | 0 |
A/V | rs368241592 | -0.615 | 0.958 | N | 0.749 | 0.367 | None | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | I | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 4.14079E-04 | 0 |
A/V | rs368241592 | -0.615 | 0.958 | N | 0.749 | 0.367 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | I | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 1E-03 | None |
A/V | rs368241592 | -0.615 | 0.958 | N | 0.749 | 0.367 | None | gnomAD-4.0.0 | 9.30655E-06 | None | None | None | None | I | None | 2.67158E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 1.69676E-06 | 1.10074E-04 | 1.60359E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/C | 0.5494 | ambiguous | 0.5016 | ambiguous | -0.798 | Destabilizing | 1.0 | D | 0.825 | deleterious | None | None | None | None | I |
A/D | 0.7903 | likely_pathogenic | 0.7418 | pathogenic | -1.089 | Destabilizing | 0.988 | D | 0.834 | deleterious | N | 0.50980339 | None | None | I |
A/E | 0.7702 | likely_pathogenic | 0.7316 | pathogenic | -1.154 | Destabilizing | 0.991 | D | 0.805 | deleterious | None | None | None | None | I |
A/F | 0.7393 | likely_pathogenic | 0.6734 | pathogenic | -1.148 | Destabilizing | 0.995 | D | 0.852 | deleterious | None | None | None | None | I |
A/G | 0.26 | likely_benign | 0.2303 | benign | -1.147 | Destabilizing | 0.919 | D | 0.6 | neutral | N | 0.503333204 | None | None | I |
A/H | 0.8301 | likely_pathogenic | 0.7986 | pathogenic | -1.257 | Destabilizing | 1.0 | D | 0.853 | deleterious | None | None | None | None | I |
A/I | 0.7196 | likely_pathogenic | 0.6253 | pathogenic | -0.501 | Destabilizing | 0.995 | D | 0.83 | deleterious | None | None | None | None | I |
A/K | 0.9192 | likely_pathogenic | 0.8998 | pathogenic | -1.113 | Destabilizing | 0.991 | D | 0.805 | deleterious | None | None | None | None | I |
A/L | 0.5033 | ambiguous | 0.4602 | ambiguous | -0.501 | Destabilizing | 0.968 | D | 0.764 | deleterious | None | None | None | None | I |
A/M | 0.4968 | ambiguous | 0.4395 | ambiguous | -0.324 | Destabilizing | 1.0 | D | 0.832 | deleterious | None | None | None | None | I |
A/N | 0.6279 | likely_pathogenic | 0.561 | ambiguous | -0.75 | Destabilizing | 0.991 | D | 0.841 | deleterious | None | None | None | None | I |
A/P | 0.9876 | likely_pathogenic | 0.9855 | pathogenic | -0.603 | Destabilizing | 0.994 | D | 0.827 | deleterious | N | 0.499970425 | None | None | I |
A/Q | 0.7127 | likely_pathogenic | 0.6877 | pathogenic | -0.972 | Destabilizing | 0.991 | D | 0.831 | deleterious | None | None | None | None | I |
A/R | 0.8752 | likely_pathogenic | 0.8611 | pathogenic | -0.696 | Destabilizing | 0.991 | D | 0.825 | deleterious | None | None | None | None | I |
A/S | 0.0929 | likely_benign | 0.0859 | benign | -1.08 | Destabilizing | 0.234 | N | 0.472 | neutral | N | 0.393688296 | None | None | I |
A/T | 0.1865 | likely_benign | 0.1533 | benign | -1.058 | Destabilizing | 0.919 | D | 0.673 | neutral | N | 0.497932958 | None | None | I |
A/V | 0.3558 | ambiguous | 0.2891 | benign | -0.603 | Destabilizing | 0.958 | D | 0.749 | deleterious | N | 0.475736878 | None | None | I |
A/W | 0.9605 | likely_pathogenic | 0.948 | pathogenic | -1.419 | Destabilizing | 1.0 | D | 0.835 | deleterious | None | None | None | None | I |
A/Y | 0.8417 | likely_pathogenic | 0.8004 | pathogenic | -1.049 | Destabilizing | 0.998 | D | 0.851 | deleterious | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.