Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 27865 | 83818;83819;83820 | chr2:178562539;178562538;178562537 | chr2:179427266;179427265;179427264 |
N2AB | 26224 | 78895;78896;78897 | chr2:178562539;178562538;178562537 | chr2:179427266;179427265;179427264 |
N2A | 25297 | 76114;76115;76116 | chr2:178562539;178562538;178562537 | chr2:179427266;179427265;179427264 |
N2B | 18800 | 56623;56624;56625 | chr2:178562539;178562538;178562537 | chr2:179427266;179427265;179427264 |
Novex-1 | 18925 | 56998;56999;57000 | chr2:178562539;178562538;178562537 | chr2:179427266;179427265;179427264 |
Novex-2 | 18992 | 57199;57200;57201 | chr2:178562539;178562538;178562537 | chr2:179427266;179427265;179427264 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs1267898928 | -1.341 | 0.943 | N | 0.609 | 0.167 | 0.478828542108 | gnomAD-2.1.1 | 4.09E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.97E-06 | 0 |
L/F | rs1267898928 | -1.341 | 0.943 | N | 0.609 | 0.167 | 0.478828542108 | gnomAD-4.0.0 | 1.60041E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.86809E-06 | 0 | 0 |
L/P | None | None | 0.994 | N | 0.768 | 0.4 | 0.737259829814 | gnomAD-4.0.0 | 6.85811E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 9.00385E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.1331 | likely_benign | 0.131 | benign | -1.576 | Destabilizing | 0.94 | D | 0.497 | neutral | None | None | None | None | N |
L/C | 0.3739 | ambiguous | 0.3608 | ambiguous | -0.891 | Destabilizing | 1.0 | D | 0.679 | prob.neutral | None | None | None | None | N |
L/D | 0.5283 | ambiguous | 0.5409 | ambiguous | -1.031 | Destabilizing | 0.991 | D | 0.76 | deleterious | None | None | None | None | N |
L/E | 0.2926 | likely_benign | 0.3071 | benign | -1.062 | Destabilizing | 0.988 | D | 0.747 | deleterious | None | None | None | None | N |
L/F | 0.1215 | likely_benign | 0.1142 | benign | -1.259 | Destabilizing | 0.943 | D | 0.609 | neutral | N | 0.474541428 | None | None | N |
L/G | 0.2731 | likely_benign | 0.2604 | benign | -1.863 | Destabilizing | 0.982 | D | 0.675 | neutral | None | None | None | None | N |
L/H | 0.1831 | likely_benign | 0.172 | benign | -1.096 | Destabilizing | 0.992 | D | 0.757 | deleterious | N | 0.474287938 | None | None | N |
L/I | 0.1545 | likely_benign | 0.1536 | benign | -0.876 | Destabilizing | 0.41 | N | 0.504 | neutral | N | 0.463185122 | None | None | N |
L/K | 0.2529 | likely_benign | 0.2767 | benign | -0.955 | Destabilizing | 0.763 | D | 0.657 | neutral | None | None | None | None | N |
L/M | 0.0999 | likely_benign | 0.1004 | benign | -0.6 | Destabilizing | 0.988 | D | 0.643 | neutral | None | None | None | None | N |
L/N | 0.2315 | likely_benign | 0.2074 | benign | -0.708 | Destabilizing | 0.991 | D | 0.761 | deleterious | None | None | None | None | N |
L/P | 0.707 | likely_pathogenic | 0.7269 | pathogenic | -1.077 | Destabilizing | 0.994 | D | 0.768 | deleterious | N | 0.47302049 | None | None | N |
L/Q | 0.1032 | likely_benign | 0.1026 | benign | -0.955 | Destabilizing | 0.989 | D | 0.749 | deleterious | None | None | None | None | N |
L/R | 0.2221 | likely_benign | 0.2443 | benign | -0.332 | Destabilizing | 0.971 | D | 0.745 | deleterious | N | 0.462424654 | None | None | N |
L/S | 0.106 | likely_benign | 0.0993 | benign | -1.298 | Destabilizing | 0.492 | N | 0.419 | neutral | None | None | None | None | N |
L/T | 0.1573 | likely_benign | 0.1531 | benign | -1.22 | Destabilizing | 0.825 | D | 0.631 | neutral | None | None | None | None | N |
L/V | 0.1172 | likely_benign | 0.1203 | benign | -1.077 | Destabilizing | 0.477 | N | 0.49 | neutral | N | 0.505970864 | None | None | N |
L/W | 0.3072 | likely_benign | 0.2951 | benign | -1.287 | Destabilizing | 0.999 | D | 0.757 | deleterious | None | None | None | None | N |
L/Y | 0.2416 | likely_benign | 0.2213 | benign | -1.061 | Destabilizing | 0.01 | N | 0.367 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.