Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 27923 | 83992;83993;83994 | chr2:178562365;178562364;178562363 | chr2:179427092;179427091;179427090 |
N2AB | 26282 | 79069;79070;79071 | chr2:178562365;178562364;178562363 | chr2:179427092;179427091;179427090 |
N2A | 25355 | 76288;76289;76290 | chr2:178562365;178562364;178562363 | chr2:179427092;179427091;179427090 |
N2B | 18858 | 56797;56798;56799 | chr2:178562365;178562364;178562363 | chr2:179427092;179427091;179427090 |
Novex-1 | 18983 | 57172;57173;57174 | chr2:178562365;178562364;178562363 | chr2:179427092;179427091;179427090 |
Novex-2 | 19050 | 57373;57374;57375 | chr2:178562365;178562364;178562363 | chr2:179427092;179427091;179427090 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/L | rs778728899 | -0.743 | 0.011 | N | 0.528 | 0.071 | 0.136095386433 | gnomAD-2.1.1 | 4.09E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.62E-05 | None | 0 | None | 0 | 0 | 0 |
I/L | rs778728899 | -0.743 | 0.011 | N | 0.528 | 0.071 | 0.136095386433 | gnomAD-4.0.0 | 6.85695E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.52283E-05 | None | 0 | 0 | 0 | 0 | 0 |
I/M | rs1704000371 | None | 0.632 | N | 0.673 | 0.315 | 0.513226221338 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 4.77555E-04 |
I/M | rs1704000371 | None | 0.632 | N | 0.673 | 0.315 | 0.513226221338 | gnomAD-4.0.0 | 6.57082E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 4.77555E-04 |
I/T | rs757118021 | -1.917 | 0.004 | N | 0.524 | 0.358 | None | gnomAD-2.1.1 | 1.09E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 2.37E-05 | 0 |
I/T | rs757118021 | -1.917 | 0.004 | N | 0.524 | 0.358 | None | gnomAD-3.1.2 | 3.29E-05 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 5.88E-05 | 0 | 0 |
I/T | rs757118021 | -1.917 | 0.004 | N | 0.524 | 0.358 | None | gnomAD-4.0.0 | 1.28596E-05 | None | None | None | None | N | None | 1.69503E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 1.91923E-05 | 1.35322E-05 | 0 |
I/V | rs778728899 | -1.132 | None | N | 0.213 | 0.132 | 0.159798565429 | gnomAD-2.1.1 | 4.09E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.99E-06 | 0 |
I/V | rs778728899 | -1.132 | None | N | 0.213 | 0.132 | 0.159798565429 | gnomAD-4.0.0 | 1.37139E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.80084E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.7776 | likely_pathogenic | 0.8216 | pathogenic | -2.453 | Highly Destabilizing | 0.529 | D | 0.725 | prob.delet. | None | None | None | None | N |
I/C | 0.852 | likely_pathogenic | 0.8992 | pathogenic | -1.964 | Destabilizing | 0.993 | D | 0.75 | deleterious | None | None | None | None | N |
I/D | 0.9939 | likely_pathogenic | 0.9953 | pathogenic | -1.81 | Destabilizing | 0.95 | D | 0.835 | deleterious | None | None | None | None | N |
I/E | 0.9867 | likely_pathogenic | 0.9889 | pathogenic | -1.662 | Destabilizing | 0.934 | D | 0.825 | deleterious | None | None | None | None | N |
I/F | 0.4114 | ambiguous | 0.4556 | ambiguous | -1.653 | Destabilizing | 0.883 | D | 0.722 | prob.delet. | None | None | None | None | N |
I/G | 0.9725 | likely_pathogenic | 0.98 | pathogenic | -2.942 | Highly Destabilizing | 0.95 | D | 0.816 | deleterious | None | None | None | None | N |
I/H | 0.9658 | likely_pathogenic | 0.9745 | pathogenic | -2.166 | Highly Destabilizing | 0.995 | D | 0.831 | deleterious | None | None | None | None | N |
I/K | 0.9723 | likely_pathogenic | 0.9765 | pathogenic | -1.74 | Destabilizing | 0.297 | N | 0.833 | deleterious | N | 0.499885201 | None | None | N |
I/L | 0.1831 | likely_benign | 0.2208 | benign | -1.084 | Destabilizing | 0.011 | N | 0.528 | neutral | N | 0.438033719 | None | None | N |
I/M | 0.2879 | likely_benign | 0.3374 | benign | -1.024 | Destabilizing | 0.632 | D | 0.673 | neutral | N | 0.485388571 | None | None | N |
I/N | 0.9421 | likely_pathogenic | 0.9548 | pathogenic | -1.834 | Destabilizing | 0.95 | D | 0.837 | deleterious | None | None | None | None | N |
I/P | 0.9822 | likely_pathogenic | 0.9824 | pathogenic | -1.516 | Destabilizing | 0.975 | D | 0.835 | deleterious | None | None | None | None | N |
I/Q | 0.9719 | likely_pathogenic | 0.9771 | pathogenic | -1.802 | Destabilizing | 0.941 | D | 0.826 | deleterious | None | None | None | None | N |
I/R | 0.9544 | likely_pathogenic | 0.9615 | pathogenic | -1.346 | Destabilizing | 0.851 | D | 0.837 | deleterious | N | 0.506468567 | None | None | N |
I/S | 0.9081 | likely_pathogenic | 0.9274 | pathogenic | -2.67 | Highly Destabilizing | 0.731 | D | 0.79 | deleterious | None | None | None | None | N |
I/T | 0.8444 | likely_pathogenic | 0.8699 | pathogenic | -2.363 | Highly Destabilizing | 0.004 | N | 0.524 | neutral | N | 0.48564206 | None | None | N |
I/V | 0.0627 | likely_benign | 0.0669 | benign | -1.516 | Destabilizing | None | N | 0.213 | neutral | N | 0.381084358 | None | None | N |
I/W | 0.976 | likely_pathogenic | 0.9834 | pathogenic | -1.788 | Destabilizing | 0.998 | D | 0.819 | deleterious | None | None | None | None | N |
I/Y | 0.8912 | likely_pathogenic | 0.9165 | pathogenic | -1.563 | Destabilizing | 0.643 | D | 0.756 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.