Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 27957 | 84094;84095;84096 | chr2:178562263;178562262;178562261 | chr2:179426990;179426989;179426988 |
N2AB | 26316 | 79171;79172;79173 | chr2:178562263;178562262;178562261 | chr2:179426990;179426989;179426988 |
N2A | 25389 | 76390;76391;76392 | chr2:178562263;178562262;178562261 | chr2:179426990;179426989;179426988 |
N2B | 18892 | 56899;56900;56901 | chr2:178562263;178562262;178562261 | chr2:179426990;179426989;179426988 |
Novex-1 | 19017 | 57274;57275;57276 | chr2:178562263;178562262;178562261 | chr2:179426990;179426989;179426988 |
Novex-2 | 19084 | 57475;57476;57477 | chr2:178562263;178562262;178562261 | chr2:179426990;179426989;179426988 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/K | rs148067743 | -0.366 | None | N | 0.081 | 0.112 | None | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 6.46E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
R/K | rs148067743 | -0.366 | None | N | 0.081 | 0.112 | None | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/K | rs148067743 | -0.366 | None | N | 0.081 | 0.112 | None | gnomAD-4.0.0 | 1.85949E-06 | None | None | None | None | N | None | 1.33294E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 1.69547E-06 | 0 | 0 |
R/M | None | None | 0.57 | N | 0.369 | 0.127 | 0.210429274316 | gnomAD-4.0.0 | 6.84421E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 1.87554E-05 | 0 | 0 | 0 | 0 |
R/T | rs148067743 | -0.326 | 0.058 | N | 0.383 | 0.082 | 0.185906805712 | gnomAD-2.1.1 | 1.45153E-04 | None | None | None | None | N | None | 0 | 8.71536E-04 | None | 0 | 0 | None | 0 | None | 0 | 4.45E-05 | 1.66279E-04 |
R/T | rs148067743 | -0.326 | 0.058 | N | 0.383 | 0.082 | 0.185906805712 | gnomAD-3.1.2 | 1.51183E-04 | None | None | None | None | N | None | 4.83E-05 | 9.17071E-04 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 2.39234E-03 |
R/T | rs148067743 | -0.326 | 0.058 | N | 0.383 | 0.082 | 0.185906805712 | 1000 genomes | 3.99361E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 2E-03 | None | None | None | 0 | None |
R/T | rs148067743 | -0.326 | 0.058 | N | 0.383 | 0.082 | 0.185906805712 | gnomAD-4.0.0 | 6.07436E-05 | None | None | None | None | N | None | 5.33177E-05 | 9.50444E-04 | None | 0 | 0 | None | 0 | 0 | 2.45844E-05 | 0 | 1.28078E-04 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.456 | ambiguous | 0.5109 | ambiguous | -0.564 | Destabilizing | 0.016 | N | 0.373 | neutral | None | None | None | None | N |
R/C | 0.2929 | likely_benign | 0.3142 | benign | -0.544 | Destabilizing | 0.869 | D | 0.394 | neutral | None | None | None | None | N |
R/D | 0.8225 | likely_pathogenic | 0.851 | pathogenic | 0.068 | Stabilizing | 0.075 | N | 0.389 | neutral | None | None | None | None | N |
R/E | 0.4342 | ambiguous | 0.4722 | ambiguous | 0.172 | Stabilizing | 0.016 | N | 0.267 | neutral | None | None | None | None | N |
R/F | 0.7381 | likely_pathogenic | 0.7781 | pathogenic | -0.568 | Destabilizing | 0.637 | D | 0.448 | neutral | None | None | None | None | N |
R/G | 0.3256 | likely_benign | 0.3916 | ambiguous | -0.835 | Destabilizing | 0.058 | N | 0.421 | neutral | N | 0.489321836 | None | None | N |
R/H | 0.1582 | likely_benign | 0.1618 | benign | -1.232 | Destabilizing | 0.366 | N | 0.273 | neutral | None | None | None | None | N |
R/I | 0.4345 | ambiguous | 0.4828 | ambiguous | 0.145 | Stabilizing | 0.366 | N | 0.49 | neutral | None | None | None | None | N |
R/K | 0.0682 | likely_benign | 0.0658 | benign | -0.515 | Destabilizing | None | N | 0.081 | neutral | N | 0.348732371 | None | None | N |
R/L | 0.3821 | ambiguous | 0.4345 | ambiguous | 0.145 | Stabilizing | 0.075 | N | 0.421 | neutral | None | None | None | None | N |
R/M | 0.3343 | likely_benign | 0.3871 | ambiguous | -0.207 | Destabilizing | 0.57 | D | 0.369 | neutral | N | 0.490015269 | None | None | N |
R/N | 0.6294 | likely_pathogenic | 0.6668 | pathogenic | -0.075 | Destabilizing | 0.075 | N | 0.259 | neutral | None | None | None | None | N |
R/P | 0.9403 | likely_pathogenic | 0.9575 | pathogenic | -0.07 | Destabilizing | 0.141 | N | 0.454 | neutral | None | None | None | None | N |
R/Q | 0.1207 | likely_benign | 0.1235 | benign | -0.236 | Destabilizing | 0.039 | N | 0.293 | neutral | None | None | None | None | N |
R/S | 0.5228 | ambiguous | 0.5809 | pathogenic | -0.755 | Destabilizing | 0.012 | N | 0.366 | neutral | N | 0.511523905 | None | None | N |
R/T | 0.2681 | likely_benign | 0.3081 | benign | -0.48 | Destabilizing | 0.058 | N | 0.383 | neutral | N | 0.488455044 | None | None | N |
R/V | 0.4522 | ambiguous | 0.4811 | ambiguous | -0.07 | Destabilizing | 0.075 | N | 0.467 | neutral | None | None | None | None | N |
R/W | 0.331 | likely_benign | 0.4034 | ambiguous | -0.349 | Destabilizing | 0.833 | D | 0.453 | neutral | N | 0.48429675 | None | None | N |
R/Y | 0.6015 | likely_pathogenic | 0.6382 | pathogenic | -0.013 | Destabilizing | 0.637 | D | 0.522 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.