Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 28035 | 84328;84329;84330 | chr2:178562029;178562028;178562027 | chr2:179426756;179426755;179426754 |
N2AB | 26394 | 79405;79406;79407 | chr2:178562029;178562028;178562027 | chr2:179426756;179426755;179426754 |
N2A | 25467 | 76624;76625;76626 | chr2:178562029;178562028;178562027 | chr2:179426756;179426755;179426754 |
N2B | 18970 | 57133;57134;57135 | chr2:178562029;178562028;178562027 | chr2:179426756;179426755;179426754 |
Novex-1 | 19095 | 57508;57509;57510 | chr2:178562029;178562028;178562027 | chr2:179426756;179426755;179426754 |
Novex-2 | 19162 | 57709;57710;57711 | chr2:178562029;178562028;178562027 | chr2:179426756;179426755;179426754 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs878854394 | -1.806 | 0.901 | N | 0.745 | 0.147 | 0.298403945805 | gnomAD-2.1.1 | 3.19E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 6.48E-05 | 0 |
L/F | rs878854394 | -1.806 | 0.901 | N | 0.745 | 0.147 | 0.298403945805 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
L/F | rs878854394 | -1.806 | 0.901 | N | 0.745 | 0.147 | 0.298403945805 | gnomAD-4.0.0 | 4.95861E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 6.78136E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.8192 | likely_pathogenic | 0.8653 | pathogenic | -2.984 | Highly Destabilizing | 0.415 | N | 0.769 | deleterious | None | None | None | None | N |
L/C | 0.8071 | likely_pathogenic | 0.8279 | pathogenic | -2.378 | Highly Destabilizing | 0.989 | D | 0.787 | deleterious | None | None | None | None | N |
L/D | 0.9983 | likely_pathogenic | 0.9989 | pathogenic | -3.805 | Highly Destabilizing | 0.987 | D | 0.861 | deleterious | None | None | None | None | N |
L/E | 0.9921 | likely_pathogenic | 0.9946 | pathogenic | -3.511 | Highly Destabilizing | 0.961 | D | 0.86 | deleterious | None | None | None | None | N |
L/F | 0.5211 | ambiguous | 0.5188 | ambiguous | -1.839 | Destabilizing | 0.901 | D | 0.745 | deleterious | N | 0.511485754 | None | None | N |
L/G | 0.97 | likely_pathogenic | 0.9803 | pathogenic | -3.586 | Highly Destabilizing | 0.961 | D | 0.852 | deleterious | None | None | None | None | N |
L/H | 0.9806 | likely_pathogenic | 0.9853 | pathogenic | -3.163 | Highly Destabilizing | 0.996 | D | 0.859 | deleterious | None | None | None | None | N |
L/I | 0.0886 | likely_benign | 0.0809 | benign | -1.187 | Destabilizing | 0.003 | N | 0.389 | neutral | N | 0.374784743 | None | None | N |
L/K | 0.9874 | likely_pathogenic | 0.9898 | pathogenic | -2.561 | Highly Destabilizing | 0.961 | D | 0.831 | deleterious | None | None | None | None | N |
L/M | 0.2514 | likely_benign | 0.2479 | benign | -1.194 | Destabilizing | 0.923 | D | 0.711 | prob.delet. | None | None | None | None | N |
L/N | 0.9891 | likely_pathogenic | 0.9918 | pathogenic | -3.152 | Highly Destabilizing | 0.987 | D | 0.843 | deleterious | None | None | None | None | N |
L/P | 0.975 | likely_pathogenic | 0.9838 | pathogenic | -1.774 | Destabilizing | 0.987 | D | 0.859 | deleterious | None | None | None | None | N |
L/Q | 0.9733 | likely_pathogenic | 0.9814 | pathogenic | -2.898 | Highly Destabilizing | 0.987 | D | 0.829 | deleterious | None | None | None | None | N |
L/R | 0.9736 | likely_pathogenic | 0.9813 | pathogenic | -2.385 | Highly Destabilizing | 0.961 | D | 0.835 | deleterious | None | None | None | None | N |
L/S | 0.9804 | likely_pathogenic | 0.9873 | pathogenic | -3.776 | Highly Destabilizing | 0.901 | D | 0.829 | deleterious | N | 0.46249297 | None | None | N |
L/T | 0.9151 | likely_pathogenic | 0.9373 | pathogenic | -3.322 | Highly Destabilizing | 0.775 | D | 0.803 | deleterious | None | None | None | None | N |
L/V | 0.1094 | likely_benign | 0.1164 | benign | -1.774 | Destabilizing | 0.003 | N | 0.392 | neutral | N | 0.396986812 | None | None | N |
L/W | 0.9341 | likely_pathogenic | 0.9437 | pathogenic | -2.312 | Highly Destabilizing | 0.996 | D | 0.834 | deleterious | None | None | None | None | N |
L/Y | 0.92 | likely_pathogenic | 0.9284 | pathogenic | -2.065 | Highly Destabilizing | 0.961 | D | 0.791 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.