Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 28063 | 84412;84413;84414 | chr2:178561945;178561944;178561943 | chr2:179426672;179426671;179426670 |
N2AB | 26422 | 79489;79490;79491 | chr2:178561945;178561944;178561943 | chr2:179426672;179426671;179426670 |
N2A | 25495 | 76708;76709;76710 | chr2:178561945;178561944;178561943 | chr2:179426672;179426671;179426670 |
N2B | 18998 | 57217;57218;57219 | chr2:178561945;178561944;178561943 | chr2:179426672;179426671;179426670 |
Novex-1 | 19123 | 57592;57593;57594 | chr2:178561945;178561944;178561943 | chr2:179426672;179426671;179426670 |
Novex-2 | 19190 | 57793;57794;57795 | chr2:178561945;178561944;178561943 | chr2:179426672;179426671;179426670 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs539595292 | -0.098 | 0.964 | N | 0.408 | 0.148 | 0.424908009808 | gnomAD-2.1.1 | 2.51E-05 | None | None | None | None | N | None | 4.13E-05 | 8.51E-05 | None | 0 | 0 | None | 0 | None | 0 | 2.35E-05 | 0 |
R/C | rs539595292 | -0.098 | 0.964 | N | 0.408 | 0.148 | 0.424908009808 | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
R/C | rs539595292 | -0.098 | 0.964 | N | 0.408 | 0.148 | 0.424908009808 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
R/C | rs539595292 | -0.098 | 0.964 | N | 0.408 | 0.148 | 0.424908009808 | gnomAD-4.0.0 | 1.42571E-05 | None | None | None | None | N | None | 1.33312E-05 | 5.002E-05 | None | 0 | 0 | None | 0 | 0 | 1.44132E-05 | 1.0981E-05 | 1.60149E-05 |
R/H | rs570847832 | -0.708 | None | N | 0.175 | 0.179 | None | gnomAD-2.1.1 | 8.47E-05 | None | None | None | None | N | None | 1.29266E-04 | 0 | None | 0 | 5.61E-05 | None | 2.61626E-04 | None | 0 | 8.92E-05 | 0 |
R/H | rs570847832 | -0.708 | None | N | 0.175 | 0.179 | None | gnomAD-3.1.2 | 3.29E-05 | None | None | None | None | N | None | 4.83E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 4.78927E-04 |
R/H | rs570847832 | -0.708 | None | N | 0.175 | 0.179 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 1E-03 | None |
R/H | rs570847832 | -0.708 | None | N | 0.175 | 0.179 | None | gnomAD-4.0.0 | 6.13723E-05 | None | None | None | None | N | None | 3.99979E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 7.03769E-05 | 8.78503E-05 | 8.00897E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.2327 | likely_benign | 0.1986 | benign | -0.542 | Destabilizing | 0.007 | N | 0.275 | neutral | None | None | None | None | N |
R/C | 0.0856 | likely_benign | 0.0811 | benign | -0.422 | Destabilizing | 0.964 | D | 0.408 | neutral | N | 0.469789076 | None | None | N |
R/D | 0.3738 | ambiguous | 0.3206 | benign | -0.001 | Destabilizing | 0.031 | N | 0.365 | neutral | None | None | None | None | N |
R/E | 0.226 | likely_benign | 0.1893 | benign | 0.108 | Stabilizing | 0.007 | N | 0.245 | neutral | None | None | None | None | N |
R/F | 0.2749 | likely_benign | 0.2506 | benign | -0.49 | Destabilizing | 0.214 | N | 0.501 | neutral | None | None | None | None | N |
R/G | 0.2039 | likely_benign | 0.1591 | benign | -0.838 | Destabilizing | 0.03 | N | 0.328 | neutral | N | 0.476764062 | None | None | N |
R/H | 0.0608 | likely_benign | 0.0613 | benign | -1.277 | Destabilizing | None | N | 0.175 | neutral | N | 0.505493649 | None | None | N |
R/I | 0.1377 | likely_benign | 0.1297 | benign | 0.24 | Stabilizing | 0.136 | N | 0.552 | neutral | None | None | None | None | N |
R/K | 0.091 | likely_benign | 0.0787 | benign | -0.562 | Destabilizing | None | N | 0.12 | neutral | None | None | None | None | N |
R/L | 0.1327 | likely_benign | 0.1232 | benign | 0.24 | Stabilizing | 0.058 | N | 0.366 | neutral | N | 0.517654869 | None | None | N |
R/M | 0.1924 | likely_benign | 0.1678 | benign | -0.06 | Destabilizing | 0.356 | N | 0.475 | neutral | None | None | None | None | N |
R/N | 0.2459 | likely_benign | 0.2218 | benign | -0.03 | Destabilizing | 0.016 | N | 0.377 | neutral | None | None | None | None | N |
R/P | 0.8145 | likely_pathogenic | 0.7127 | pathogenic | 0.001 | Stabilizing | 0.232 | N | 0.53 | neutral | N | 0.485918322 | None | None | N |
R/Q | 0.0725 | likely_benign | 0.0703 | benign | -0.198 | Destabilizing | 0.001 | N | 0.183 | neutral | None | None | None | None | N |
R/S | 0.2344 | likely_benign | 0.2028 | benign | -0.699 | Destabilizing | 0.001 | N | 0.2 | neutral | N | 0.45591019 | None | None | N |
R/T | 0.1346 | likely_benign | 0.1203 | benign | -0.414 | Destabilizing | 0.016 | N | 0.383 | neutral | None | None | None | None | N |
R/V | 0.1613 | likely_benign | 0.159 | benign | 0.001 | Stabilizing | 0.072 | N | 0.46 | neutral | None | None | None | None | N |
R/W | 0.1495 | likely_benign | 0.1302 | benign | -0.239 | Destabilizing | 0.864 | D | 0.42 | neutral | None | None | None | None | N |
R/Y | 0.1833 | likely_benign | 0.1639 | benign | 0.091 | Stabilizing | 0.038 | N | 0.555 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.